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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 6831588

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35540627 GT-AG 0 0.0054509623843417 2486 rna-XM_009707474.1 6831588 1 33363 35848 Cariama cristata 54380 AAG|GTATGTTTAA...CATTTTTTGATT/CATTTTTTGATT...TGCAG|GCC 0 1 0.658
35540628 GT-AG 0 1.000000099473604e-05 816 rna-XM_009707474.1 6831588 2 32487 33302 Cariama cristata 54380 CTG|GTAAGGCAGT...TCTCCCTCAATA/TTCTCCCTCAAT...TGCAG|GAA 0 1 5.044
35540629 GT-AG 0 4.936136206043261e-05 892 rna-XM_009707474.1 6831588 3 31415 32306 Cariama cristata 54380 CAG|GTAAATTTCA...TTAATTTTATCT/ATTAATTTTATC...TATAG|GAA 0 1 18.202
35540630 GT-AG 0 0.0002855114979612 858 rna-XM_009707474.1 6831588 4 30330 31187 Cariama cristata 54380 CAG|GTATAAATTA...TTCCCCTGAATG/TCCGGTTTTATC...CACAG|ACT 2 1 34.795
35540631 GT-AG 0 1.000000099473604e-05 538 rna-XM_009707474.1 6831588 5 29694 30231 Cariama cristata 54380 AAG|GTGAGCTGGG...TATGTTGTATTG/CTGTGTGTCACC...TGCAG|GTG 1 1 41.959
35540632 GT-AG 0 1.000000099473604e-05 1688 rna-XM_009707474.1 6831588 6 27788 29475 Cariama cristata 54380 AAG|GTGCAGAGAA...TTCAGTTTGACA/TTCAGTTTGACA...TGCAG|AAC 0 1 57.895
35540633 GT-AG 0 1.000000099473604e-05 629 rna-XM_009707474.1 6831588 7 26933 27561 Cariama cristata 54380 AGG|GTGAGTCACT...TCTCCCATACTT/CTCTCTGTCATT...GCCAG|CAT 1 1 74.415
35540634 GT-AG 0 1.000000099473604e-05 654 rna-XM_009707474.1 6831588 8 26031 26684 Cariama cristata 54380 AAG|GTGGGTGATG...TCCCCTTTTGTT/GAACAACTCACA...TTCAG|AAA 0 1 92.544

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 71.822ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)