introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 6831580
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35540519 | GT-AG | 0 | 1.000000099473604e-05 | 7444 | rna-XM_009698581.1 6831580 | 1 | 42244 | 49687 | Cariama cristata 54380 | AAG|GTAAGTCAGC...GTTTTTTTAATT/GTTTTTTTAATT...TGAAG|TCA | 1 | 1 | 17.612 |
35540520 | GT-AG | 0 | 4.2226152374955005e-05 | 3564 | rna-XM_009698581.1 6831580 | 2 | 49868 | 53431 | Cariama cristata 54380 | AAG|GTTTAGTACA...CTCTTCTTAATT/CTCTTCTTAATT...TGCAG|GTT | 1 | 1 | 30.877 |
35540521 | GT-AG | 0 | 1.000000099473604e-05 | 14652 | rna-XM_009698581.1 6831580 | 3 | 53621 | 68272 | Cariama cristata 54380 | AAG|GTAAATGTCT...TTCTCCTTTTCT/TCTTTGTTTATT...ACAAG|TTT | 1 | 1 | 44.805 |
35540522 | GT-AG | 0 | 1.000000099473604e-05 | 465 | rna-XM_009698581.1 6831580 | 4 | 68465 | 68929 | Cariama cristata 54380 | CAG|GTAAGGGAGC...TCTGCCTTTTTG/ATGGTAATAACC...TACAG|AAC | 1 | 1 | 58.954 |
35540523 | GT-AG | 0 | 1.000000099473604e-05 | 1659 | rna-XM_009698581.1 6831580 | 5 | 69075 | 70733 | Cariama cristata 54380 | AAG|GTTTGTACTG...CTCTCTGTGATA/GTGCTTCTGACA...CATAG|AGG | 2 | 1 | 69.639 |
35540524 | GT-AG | 0 | 1.000000099473604e-05 | 1196 | rna-XM_009698581.1 6831580 | 6 | 71117 | 72312 | Cariama cristata 54380 | ATG|GTGAGTCTTG...TATTTCTTTTTT/ATTACAATCAGC...CCTAG|AGA | 1 | 1 | 97.863 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);