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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 6831579

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35540510 GT-AG 0 0.0096944343393812 1559 rna-XM_009696380.1 6831579 1 1234 2792 Cariama cristata 54380 ATG|GTAACTTTTC...ATGACTTTCTTT/ATGCATATGACT...CCTAG|GGA 2 1 7.086
35540511 GT-AG 0 1.208577888394688e-05 3743 rna-XM_009696380.1 6831579 2 2866 6608 Cariama cristata 54380 AAG|GTAAGTTTAC...CATATTTTGAAC/TGCTGTTTCATA...TGCAG|ATT 0 1 12.364
35540512 GT-AG 0 1.000000099473604e-05 10784 rna-XM_009696380.1 6831579 3 6721 17504 Cariama cristata 54380 CAG|GTTCGGACAA...TCCTCTTTGAAT/TTTCTTCTAAAA...CTTAG|ACC 1 1 20.463
35540513 GT-AG 0 0.0376183120139481 768 rna-XM_009696380.1 6831579 4 17643 18410 Cariama cristata 54380 AGG|GTATGTTTTC...GTTTTCTTCTTT/TAGCTTTCTATT...TACAG|ACT 1 1 30.441
35540514 GC-AG 0 0.0003574199286272 708 rna-XM_009696380.1 6831579 5 18602 19309 Cariama cristata 54380 AGT|GCTCACCAAG...GATATTTTAACT/TTTTAACTCATT...CAAAG|CAT 0 1 44.252
35540515 GT-AG 0 0.0163959239050862 2027 rna-XM_009696380.1 6831579 6 19445 21471 Cariama cristata 54380 GAG|GTATTCTAGT...CTAATGTTAATT/CTAATGTTAATT...TGTAG|CCC 0 1 54.013
35540516 GT-AG 0 1.000000099473604e-05 1350 rna-XM_009696380.1 6831579 7 21749 23098 Cariama cristata 54380 GAG|GTACTGTGCA...TGTTTTTTCTCC/CTGTGGTTTATG...AACAG|GGC 1 1 74.042
35540517 GT-AG 0 0.0005923660068587 1579 rna-XM_009696380.1 6831579 8 23299 24877 Cariama cristata 54380 CAG|GTATTATTCA...TTATACTTACCA/TTTATACTTACC...TAAAG|GCA 0 1 88.503
35540518 GT-AG 0 1.000000099473604e-05 301 rna-XM_009696380.1 6831579 9 24923 25223 Cariama cristata 54380 TCT|GTCAAGGTAA...GAATTTTTTTCT/AGATTGCTGACT...CTTAG|AAA 0 1 91.757

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 28.753ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)