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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

37 rows where transcript_id = 6831576

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35540458 GT-AG 0 1.000000099473604e-05 194 rna-XM_009708808.1 6831576 1 918 1111 Cariama cristata 54380 GAG|GTAAGGAAAA...GCTGCCTGATCT/TATTTTCTCACA...CCCAG|CTA 0 1 2.269
35540459 GT-AG 0 1.000000099473604e-05 401 rna-XM_009708808.1 6831576 2 1304 1704 Cariama cristata 54380 AAG|GTGAGAAGCT...TTTTTCTCAGAG/CTTTTTCTCAGA...CACAG|GAG 0 1 5.672
35540460 GT-AG 0 1.000000099473604e-05 436 rna-XM_009708808.1 6831576 3 1824 2259 Cariama cristata 54380 CAG|GTGAAGTGCA...CTTTTCTTAACT/CTTTTCTTAACT...TGCAG|GCC 2 1 7.781
35540461 GT-AG 0 1.000000099473604e-05 87 rna-XM_009708808.1 6831576 4 2502 2588 Cariama cristata 54380 AAG|GTGAGATCAA...GTCTTTCTGACT/GTCTTTCTGACT...CCCAG|GAC 1 1 12.07
35540462 GT-AG 0 2.92575510265488e-05 131 rna-XM_009708808.1 6831576 5 2717 2847 Cariama cristata 54380 TCA|GTAAGTGACG...TTTCTTTTACCT/TTTTCTTTTACC...ATCAG|AGT 0 1 14.339
35540463 GT-AG 0 3.129459242989538e-05 432 rna-XM_009708808.1 6831576 6 2984 3415 Cariama cristata 54380 AAG|GTATTGATGC...AACTCCTCACCA/TAACTCCTCACC...TGCAG|GTG 1 1 16.749
35540464 GT-AG 0 1.000000099473604e-05 132 rna-XM_009708808.1 6831576 7 3598 3729 Cariama cristata 54380 TGT|GTGAGTACTG...GTTTTCTGATTT/GGTTTTCTGATT...TGTAG|GAA 0 1 19.975
35540465 GT-AG 0 1.000000099473604e-05 942 rna-XM_009708808.1 6831576 8 3970 4911 Cariama cristata 54380 ACT|GTGAGTTTCT...CTCTGTTTAACT/CTCTGTTTAACT...TTCAG|TGC 0 1 24.229
35540466 GT-AG 0 1.000000099473604e-05 86 rna-XM_009708808.1 6831576 9 5116 5201 Cariama cristata 54380 CAG|GTGAGTGATG...AACATCCTAGTA/ATCCTAGTAACT...TCCAG|CTG 0 1 27.845
35540467 GT-AG 0 1.000000099473604e-05 228 rna-XM_009708808.1 6831576 10 5408 5635 Cariama cristata 54380 TAG|GTAGGGGAGG...TAAGACTTACTG/TTAAGACTTACT...CACAG|TGT 2 1 31.496
35540468 GT-AG 0 1.000000099473604e-05 305 rna-XM_009708808.1 6831576 11 5768 6072 Cariama cristata 54380 CAG|GTAAGAGAAA...AAGCCATTAAAC/CAGTCTGTTACA...CATAG|GGA 2 1 33.836
35540469 GT-AG 0 6.588235170240886e-05 384 rna-XM_009708808.1 6831576 12 6170 6553 Cariama cristata 54380 GAT|GTAAGTTACT...TCTTCCTTCTTT/AGTTGTCTAACC...TGTAG|CCA 0 1 35.555
35540470 GT-AG 0 1.000000099473604e-05 150 rna-XM_009708808.1 6831576 13 6746 6895 Cariama cristata 54380 GAG|GTGAGAGCTG...ATACTCTTACTG/CTCTTACTGACT...CATAG|GGC 0 1 38.958
35540471 GT-AG 0 1.000000099473604e-05 1008 rna-XM_009708808.1 6831576 14 7097 8104 Cariama cristata 54380 AAG|GTACAGAACT...TCATCCTTTTCC/ACCATGTTCATC...TGCAG|AAG 0 1 42.52
35540472 GT-AG 0 1.000000099473604e-05 2014 rna-XM_009708808.1 6831576 15 8243 10256 Cariama cristata 54380 AAG|GTACAGAGAA...CATTTCTTCACC/CATTTCTTCACC...TCCAG|TTC 0 1 44.966
35540473 GT-AG 0 0.0362441148558931 109 rna-XM_009708808.1 6831576 16 10364 10472 Cariama cristata 54380 CCA|GTATGTCTTG...TTCTCCTTTGTG/CTTTTGCTGAGT...TGCAG|TAA 2 1 46.863
35540474 GT-AG 0 1.000000099473604e-05 319 rna-XM_009708808.1 6831576 17 10647 10965 Cariama cristata 54380 GAA|GTGAGTGTGA...TTCTCTTTTTCT/ATGTTAGTCATT...TTCAG|GAA 2 1 49.947
35540475 GT-AG 0 0.0005907761058897 471 rna-XM_009708808.1 6831576 18 11108 11578 Cariama cristata 54380 ATG|GTATGTCCAG...CACCCCTTACTC/CCACCCCTTACT...CTCAG|GAA 0 1 52.464
35540476 GT-AG 0 0.0001106026005046 112 rna-XM_009708808.1 6831576 19 11711 11822 Cariama cristata 54380 CAG|GTATATGAGG...ATCCCCTTGTCC/GTTTTTCTGATG...TGCAG|ATG 0 1 54.803
35540477 GT-AG 0 6.072069085254858e-05 209 rna-XM_009708808.1 6831576 20 11941 12149 Cariama cristata 54380 ATG|GTATGGAGTC...CTCTCCCTGATT/CTCTCCCTGATT...CTAAG|CTC 1 1 56.895
35540478 GT-AG 0 1.000000099473604e-05 287 rna-XM_009708808.1 6831576 21 12275 12561 Cariama cristata 54380 CAG|GTGAGTCTGA...TAGCTCTAGACT/ACTGTTCTGAGC...TCTAG|GCC 0 1 59.11
35540479 GT-AG 0 1.000000099473604e-05 166 rna-XM_009708808.1 6831576 22 12800 12965 Cariama cristata 54380 GGG|GTGAGTGCCT...AGTCCCTTGAGA/GATCCACTCAGC...CTCAG|GGG 1 1 63.329
35540480 GT-AG 0 1.000000099473604e-05 162 rna-XM_009708808.1 6831576 23 13139 13300 Cariama cristata 54380 GGG|GTGAGTATGA...GGGCTCTAAATT/AAATTTGTTACT...GGCAG|GAG 0 1 66.395
35540481 GT-AG 0 1.000000099473604e-05 100 rna-XM_009708808.1 6831576 24 13482 13581 Cariama cristata 54380 GAG|GTACAAATCC...TGCTGTTTTTCT/CTCAGGCTCACG...TTCAG|ACT 1 1 69.603
35540482 GT-AG 0 0.0001283760320504 171 rna-XM_009708808.1 6831576 25 13669 13839 Cariama cristata 54380 AAG|GTAAGTTCTG...TCTTCCTTAGCT/CTCTTCCTTAGC...TTCAG|CAG 1 1 71.145
35540483 GT-AG 0 1.000000099473604e-05 86 rna-XM_009708808.1 6831576 26 13929 14014 Cariama cristata 54380 GAG|GTAAGTAGTG...CTTGCCATATCT/TCTTGCCATATC...TCTAG|GTC 0 1 72.722
35540484 GT-AG 0 1.000000099473604e-05 504 rna-XM_009708808.1 6831576 27 14149 14652 Cariama cristata 54380 CAA|GTGAGTCTGC...TGTCTCTCAACT/TTGTCTCTCAAC...TCCAG|GGC 2 1 75.097
35540485 GT-AG 0 1.000000099473604e-05 186 rna-XM_009708808.1 6831576 28 14798 14983 Cariama cristata 54380 AAG|GTAGGTGTCT...TTTCTCTTCCTC/CTTTGTATGACT...TGCAG|GTG 0 1 77.667
35540486 GT-AG 0 1.000000099473604e-05 373 rna-XM_009708808.1 6831576 29 15150 15522 Cariama cristata 54380 CTG|GTGAGAGCTC...TTCTCTTTTGTG/TGCTGTGCTACT...CACAG|AAG 1 1 80.61
35540487 GT-AG 0 1.000000099473604e-05 220 rna-XM_009708808.1 6831576 30 15633 15852 Cariama cristata 54380 GAG|GTGAGTGTTG...TTCTCATTGATT/CCACTTCTCATT...CTCAG|CAG 0 1 82.559
35540488 GT-AG 0 0.9305394730769492 261 rna-XM_009708808.1 6831576 31 15989 16249 Cariama cristata 54380 AAG|GTATCCCTAG...TCCCTCTTCTCT/CTACATCTCATG...TGCAG|CTG 1 1 84.97
35540489 GT-AG 0 1.000000099473604e-05 112 rna-XM_009708808.1 6831576 32 16328 16439 Cariama cristata 54380 AAG|GTAAGTCATA...TTCTTTCTAATA/TTCTTTCTAATA...TACAG|ATG 1 1 86.352
35540490 GT-AG 0 1.000000099473604e-05 97 rna-XM_009708808.1 6831576 33 16578 16674 Cariama cristata 54380 CTG|GTATGAGGAA...TAACTTTTGAAC/CTTGTATTCATG...TCCAG|AGC 1 1 88.798
35540491 GT-AG 0 74.58369939831847 317 rna-XM_009708808.1 6831576 34 16784 17100 Cariama cristata 54380 CAA|GTATCCTTAG...TTTGCCTGAGCT/CTTGTTCTCACT...CTCAG|TCA 2 1 90.73
35540492 GT-AG 0 1.000000099473604e-05 978 rna-XM_009708808.1 6831576 35 17234 18211 Cariama cristata 54380 AAG|GTAAGGATTT...TTTCTCTCATTA/CTTTCTCTCATT...TGCAG|CTT 0 1 93.088
35540493 GT-AG 0 1.000000099473604e-05 115 rna-XM_009708808.1 6831576 36 18408 18522 Cariama cristata 54380 AAG|GTAATGCAGT...TATCCCTTTCCC/TCCCCTCTGAAC...TCCAG|TTT 1 1 96.562
35540494 GT-AG 0 1.000000099473604e-05 122 rna-XM_009708808.1 6831576 37 18699 18820 Cariama cristata 54380 CAA|GTGCGTACCT...GGTCCCTTGACC/TCTTCTCTCACC...TACAG|GTG 0 1 99.681

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.332ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)