introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 670715

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
3637041 GT-AG 0 0.0010179496168691 47 rna-BJG266_LOCUS321 670715 1 1025350 1025396 Adineta steineri 433720 AGA|GTAAATTTTA...AATTATTTGATT/AATTATTTGATT...CGTAG|TTT 2 1 6.83
3637042 GT-AG 0 1.000000099473604e-05 49 rna-BJG266_LOCUS321 670715 2 1025155 1025203 Adineta steineri 433720 CAG|GTTAATTAAA...GTTCTATTAATA/GTTCTATTAATA...TATAG|AAC 1 1 12.495
3637043 GT-AG 0 1.000000099473604e-05 57 rna-BJG266_LOCUS321 670715 3 1024628 1024684 Adineta steineri 433720 CAG|GTAGAAAAAA...ATATTTTTAAAA/TAAATATTTATT...TCAAG|GCA 0 1 30.733
3637044 GT-AG 0 0.0054138146710103 307 rna-BJG266_LOCUS321 670715 4 1024096 1024402 Adineta steineri 433720 CAA|GTAACACTCG...TATTTCTTAAAA/ATATTTCTTAAA...TTAAG|AAT 0 1 39.464
3637045 GT-AG 0 3.30950500286938e-05 56 rna-BJG266_LOCUS321 670715 5 1023944 1023999 Adineta steineri 433720 AAA|GTATAAGAAT...TTATTTTCAATT/TTTATTTTCAAT...TTTAG|TTA 0 1 43.19
3637046 GT-AG 0 0.0004799844162286 109 rna-BJG266_LOCUS321 670715 6 1023221 1023329 Adineta steineri 433720 AAA|GTAAATTTTC...ACTGTTTTATAA/TGTTTTATAATC...GCTAG|TCG 2 1 67.016
3637047 GT-AG 0 5.376496190120022e-05 49 rna-BJG266_LOCUS321 670715 7 1022681 1022729 Adineta steineri 433720 ATA|GTAAATAGCA...AAATCTTTATTT/TTTATTTTCATT...TTTAG|ATC 1 1 86.069

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);