WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 670653

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
3636253	GT-AG	2.8813890848996483e-05	69	rna-BJG266_LOCUS461 670653	1	1510630	1510698	Adineta steineri 433720	AGT\|GTAAGATTCT...TATTTCATAGTT/TTGTATTTCATA...TACAG\|GTA	1	1	0.466
3636254	GT-AG	1.000000099473604e-05	343	rna-BJG266_LOCUS461 670653	2	1511575	1511917	Adineta steineri 433720	GTA\|GTAAGTAAAA...TTTATTTTATAA/TGTATTTTTATT...TATAG\|ATG	1	1	19.017
3636255	GT-AG	0.0040030287047917	63	rna-BJG266_LOCUS461 670653	3	1511951	1512013	Adineta steineri 433720	CTG\|GTATTTTCAA...AATTTCTTATGC/TAATTTCTTATG...AATAG\|TAA	1	1	19.716
3636256	GT-AG	0.0837378946813691	236	rna-BJG266_LOCUS461 670653	4	1512098	1512333	Adineta steineri 433720	ACC\|GTATGTAATG...GTATCTTTGATA/GTATCTTTGATA...TGTAG\|CTA	1	1	21.495
3636257	GT-AG	1.8687054409843333e-05	270	rna-BJG266_LOCUS461 670653	5	1513222	1513491	Adineta steineri 433720	ATA\|GTAAGTAAAA...GTTTTTTTAATT/GTTTTTTTAATT...TTCAG\|GTA	1	1	40.301
3636258	GT-AG	0.000186998270683	52	rna-BJG266_LOCUS461 670653	6	1514380	1514431	Adineta steineri 433720	GTA\|GTAAGTTATT...AGGTTTTTAATG/TATATATTTATT...TGTAG\|GTC	1	1	59.106
3636259	GT-AG	2.1490888113589038e-05	221	rna-BJG266_LOCUS461 670653	7	1515283	1515503	Adineta steineri 433720	CGA\|GTACAACAAT...ATTGTTTTATAT/TTCTCTCTAATT...TTCAG\|CAA	0	1	77.128

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);