WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 670649

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
3636178	GT-AG	0.0001374201078742	88	rna-BJG266_LOCUS169 670649	1	513700	513787	Adineta steineri 433720	ATT\|GTAAGTATTT...TGTATCATAATA/ATAATACTAATG...TTCAG\|TTA	0	1	5.667
3636179	GT-AG	1.000000099473604e-05	161	rna-BJG266_LOCUS169 670649	2	513404	513564	Adineta steineri 433720	GAG\|GTAGTGCACA...AAATTTTTATAT/GAAATTTTTATA...TCTAG\|ACA	0	1	8.167
3636180	GT-AG	4.030490352805109e-05	1281	rna-BJG266_LOCUS169 670649	3	512051	513331	Adineta steineri 433720	TTG\|GTAAGCATGA...CTTTTATTAATT/CTTTTATTAATT...TTTAG\|AAT	0	1	9.5
3636181	GT-AG	1.000000099473604e-05	303	rna-BJG266_LOCUS169 670649	4	511645	511947	Adineta steineri 433720	CAG\|GTAAAGTTAC...ATCTTCATGACT/TAAATCTTCATG...TCTAG\|GGA	1	1	11.407
3636182	GT-AG	1.000000099473604e-05	715	rna-BJG266_LOCUS169 670649	5	510825	511539	Adineta steineri 433720	AAG\|GTTTGTCATT...TGTATTTTATTT/TTTTATTTGATT...TATAG\|GTG	1	1	13.352
3636183	GT-AG	1.000000099473604e-05	74	rna-BJG266_LOCUS169 670649	6	509983	510056	Adineta steineri 433720	TGA\|GTAAGTCAAT...TTCTCTTTCTCT/TTATTTATAAGA...TCTAG\|ATC	1	1	27.574
3636184	GT-AG	4.505780410603892e-05	71	rna-BJG266_LOCUS169 670649	7	508423	508493	Adineta steineri 433720	GAG\|GTATAAAAAA...AATTTTTTAAAT/TAAATTCTCACG...TCTAG\|TCC	2	1	55.148
3636185	GT-AG	1.000000099473604e-05	55	rna-BJG266_LOCUS169 670649	8	506801	506855	Adineta steineri 433720	AAA\|GTAAAACATA...TATTTTTTAAAT/TATTTTTTAAAT...TTTAG\|AAT	0	1	84.167

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);