WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 623847

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
3437939	GT-AG	1.000000099473604e-05	54	rna-EDS130_LOCUS195 623847	1	546452	546505	Adineta ricciae 249248	GCT\|GTAAGAAGAT...GCTGTTTTGTTT/TTCGATCTCATT...TTTAG\|GAA	0	1	18.302
3437940	GT-AG	0.0005423842316249	51	rna-EDS130_LOCUS195 623847	2	546649	546699	Adineta ricciae 249248	AGT\|GTAAGCTTTT...ATCATGTAAATT/CGTGTGCTAAGA...TCTAG\|AGG	2	1	25.281
3437941	GT-AG	2.626919372649478e-05	48	rna-EDS130_LOCUS195 623847	3	546806	546853	Adineta ricciae 249248	GCA\|GTTCGTTCTT...CCATTTATGAAA/ATGAAATTGAAT...TTTAG\|GTT	0	1	30.454
3437942	GT-AG	0.0103287034981805	53	rna-EDS130_LOCUS195 623847	4	547193	547245	Adineta ricciae 249248	GAT\|GTAAACTTGT...GATTTCTTGAGT/GAAATTCTTATG...CTTAG\|GAA	0	1	46.999
3437943	GT-AG	1.000000099473604e-05	65	rna-EDS130_LOCUS195 623847	5	547453	547517	Adineta ricciae 249248	ACG\|GTAAAACGAT...TTTCGTTTAATT/TTTCGTTTAATT...TATAG\|ATT	0	1	57.101
3437944	GT-AG	1.000000099473604e-05	52	rna-EDS130_LOCUS195 623847	6	547692	547743	Adineta ricciae 249248	ACG\|GTAAAATTAT...CTCTCATTGACT/TTTTCTCTCATT...TACAG\|GGT	0	1	65.593
3437945	GT-AG	1.000000099473604e-05	50	rna-EDS130_LOCUS195 623847	7	548033	548082	Adineta ricciae 249248	ATG\|GTAAAAATCA...AACTCAATAACT/AGAAAACTCAAT...TTTAG\|GTT	1	1	79.697
3437946	GT-AG	1.000000099473604e-05	59	rna-EDS130_LOCUS195 623847	8	548297	548355	Adineta ricciae 249248	CTG\|GTTAGTAGAC...TGTACTTCGATG/ATTTTTGTGAAT...TTTAG\|GCA	2	1	90.142

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);