WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 623810

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
3437609	GT-AG	1.000000099473604e-05	51	rna-EDS130_LOCUS77 623810	1	182985	183035	Adineta ricciae 249248	GAG\|GTAAGCATCT...ATTGTATTATAA/AATTGTATTATA...TCTAG\|AAC	1	1	3.253
3437610	GT-AG	1.000000099473604e-05	56	rna-EDS130_LOCUS77 623810	2	183422	183477	Adineta ricciae 249248	AAT\|GTAATACGAA...TCATATTTATTT/ATTTATTTCATG...TCTAG\|ATT	0	1	18.025
3437611	GT-AG	1.000000099473604e-05	62	rna-EDS130_LOCUS77 623810	3	184270	184331	Adineta ricciae 249248	AAG\|GTAAAAGAGA...ATTTCTTTTTCT/TCTGTTGTTATT...CTCAG\|AAA	0	1	48.335
3437612	GT-AG	1.000000099473604e-05	55	rna-EDS130_LOCUS77 623810	4	184703	184757	Adineta ricciae 249248	AGG\|GTAAAATATT...TTCTTCATAATT/TTTCCTTTCACT...TATAG\|TCG	2	1	62.533
3437613	GT-AG	4.783453768608752e-05	58	rna-EDS130_LOCUS77 623810	5	184975	185032	Adineta ricciae 249248	AAA\|GTTCACCAAT...ATTTTCTTTACG/ATTTTCTTTACG...TTTAG\|CAA	0	1	70.838
3437614	GT-AG	0.0002456564521028	202	rna-EDS130_LOCUS77 623810	6	185086	185287	Adineta ricciae 249248	ACG\|GTTCTTTTTG...GCGTTTTCAACG/CGCGTTTTCAAC...ACAAG\|AAG	2	1	72.866
3437615	GT-AG	1.000000099473604e-05	55	rna-EDS130_LOCUS77 623810	7	185407	185461	Adineta ricciae 249248	AAG\|GTTCGGATAT...TTTACCTAACCT/ATTTACCTAACC...TTTAG\|GTG	1	1	77.421
3437616	GT-AG	1.000000099473604e-05	47	rna-EDS130_LOCUS77 623810	8	185547	185593	Adineta ricciae 249248	TCA\|GTGAGTGAAG...CATTTCTCATTC/ACATTTCTCATT...TTCAG\|TTG	2	1	80.674

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);