introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 623780

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
3437271 GT-AG 0 2.632803595522505e-05 50 rna-EDS130_LOCUS22 623780 1 57695 57744 Adineta ricciae 249248 TTG|GTAAGTTGTT...ATCTCCATATTT/TATCTCCATATT...GTTAG|AAT 1 1 3.966
3437272 GT-AG 0 1.000000099473604e-05 454 rna-EDS130_LOCUS22 623780 2 56710 57163 Adineta ricciae 249248 ATG|GTAAGATATA...TATGTCTGATCT/ATATGTCTGATC...TATAG|ACA 1 1 19.452
3437273 GT-AG 0 2.1489838730335124e-05 95 rna-EDS130_LOCUS22 623780 3 55201 55295 Adineta ricciae 249248 AAA|GTAGGTCCTT...CATTCCTTTTCT/TTTTTTTTCATT...TCTAG|TTA 2 1 60.688
3437274 GT-AG 0 1.000000099473604e-05 109 rna-EDS130_LOCUS22 623780 4 54548 54656 Adineta ricciae 249248 CAG|GTAAGATTGC...CGTTTCTTAATG/TCTTTTCTCACG...TTTAG|GTG 0 1 76.553
3437275 GT-AG 0 8.933471842642256e-05 201 rna-EDS130_LOCUS22 623780 5 54262 54462 Adineta ricciae 249248 CAG|GTATTTAAAA...ACATTTTTCATT/ACATTTTTCATT...ACTAG|AAT 1 1 79.032
3437276 GT-AG 0 1.4235338658143007e-05 48 rna-EDS130_LOCUS22 623780 6 53880 53927 Adineta ricciae 249248 AAG|GTAATCGATA...TTGTTCTTGAAG/AATTATTTTATA...TGTAG|AAC 2 1 88.772
3437277 GT-AG 0 9.50250058221573e-05 60 rna-EDS130_LOCUS22 623780 7 53741 53800 Adineta ricciae 249248 CCT|GTAAGTGATT...AGTTTCTTATCT/TAGTTTCTTATC...TTCAG|AAT 0 1 91.076

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);