WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 623763

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
3436994	GT-AG	1.000000099473604e-05	277	rna-EDS130_LOCUS476 623763	1	1354618	1354894	Adineta ricciae 249248	ATG\|GTCAGAAGAC...GCTTCGTTCATA/GCTTCGTTCATA...GACAG\|ACC	2	1	0.164
3436995	GT-AG	4.483147373687284e-05	578	rna-EDS130_LOCUS476 623763	2	1354926	1355503	Adineta ricciae 249248	GTA\|GTAAGTATCA...ATGGACTTATCT/AATGGACTTATC...TACAG\|AAT	0	1	0.801
3436996	GT-AG	1.000000099473604e-05	51	rna-EDS130_LOCUS476 623763	3	1355570	1355620	Adineta ricciae 249248	ACG\|GTGAGTTACT...CGATTTTCAAAA/AAAGAACTAACT...TCTAG\|TCT	0	1	2.157
3436997	GT-AG	1.000000099473604e-05	57	rna-EDS130_LOCUS476 623763	4	1356166	1356222	Adineta ricciae 249248	GCG\|GTAAGTAAAG...TGTATTGTATTT/CCAATGTTCACA...TTTAG\|ACC	2	1	13.35
3436998	GT-AG	1.000000099473604e-05	59	rna-EDS130_LOCUS476 623763	5	1356873	1356931	Adineta ricciae 249248	ATA\|GTTAGTTACG...TTTGTTTTACTC/CTTTGTTTTACT...GATAG\|ATA	1	1	26.7
3436999	GT-AG	2.305592354590138e-05	61	rna-EDS130_LOCUS476 623763	6	1357339	1357399	Adineta ricciae 249248	ACT\|GTAAGTAAAC...TTGTCTTTACAC/CTTGTCTTTACA...GATAG\|ACC	0	1	35.059
3437000	GT-AG	2.0890077513041445e-05	73	rna-EDS130_LOCUS476 623763	7	1358535	1358607	Adineta ricciae 249248	ATG\|GTACGTTCAA...CTTTCTTTCGAG/GAGATTGTCAAT...TGTAG\|GTA	1	1	58.369
3437001	GT-AG	5.689030247086843e-05	72	rna-EDS130_LOCUS476 623763	8	1359244	1359315	Adineta ricciae 249248	TCG\|GTTTGATTTT...TATTTCTTCTTC/CATTTGTTCACA...CTTAG\|GTT	1	1	71.432

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);