WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 623762

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
3436987	GT-AG	0.0009999315286285	68	rna-EDS130_LOCUS312 623762	1	879498	879565	Adineta ricciae 249248	ATT\|GTATGTAAAT...GTCTGCTTATTT/TATTTTCTCATT...CATAG\|GTA	0	1	0.244
3436988	GT-AG	1.2123552299716366e-05	56	rna-EDS130_LOCUS312 623762	2	880362	880417	Adineta ricciae 249248	ATG\|GTAAGCACAC...AAATCTTTACTC/AAAATCTTTACT...TTCAG\|CGT	1	1	16.413
3436989	GT-AG	1.000000099473604e-05	60	rna-EDS130_LOCUS312 623762	3	881165	881224	Adineta ricciae 249248	CAC\|GTACGAAAAG...ATTTCCTTCGTT/GAAACTTTCACA...CTTAG\|AGG	1	1	31.586
3436990	GT-AG	1.000000099473604e-05	60	rna-EDS130_LOCUS312 623762	4	882426	882485	Adineta ricciae 249248	AAG\|GTAATGTCAC...CTTTTGTTAAAG/CTTTTGTTAAAG...TTTAG\|AGC	2	1	55.982
3436991	GT-AG	1.000000099473604e-05	372	rna-EDS130_LOCUS312 623762	5	883759	884130	Adineta ricciae 249248	GAC\|GTAAGTCGAA...TTTGTTTCATTT/ATTTGTTTCATT...TCTAG\|ACT	0	1	81.84
3436992	GT-AG	0.0012904259286335	59	rna-EDS130_LOCUS312 623762	6	884256	884314	Adineta ricciae 249248	TTG\|GTATGTTAAT...AATCTCTTCTCT/TTTGTACCAACA...TTTAG\|TCC	2	1	84.379
3436993	GT-AG	4.820524335300344e-05	64	rna-EDS130_LOCUS312 623762	7	884554	884617	Adineta ricciae 249248	TTG\|GTAAATTTAA...GTCTCTTTCAAT/GTCTCTTTCAAT...TCTAG\|CCT	1	1	89.234

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);