WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 5982093

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
30725480	GT-AG	1.000000099473604e-05	197	rna-XM_025893005.1 5982093	1	1380899	1381095	Callorhinus ursinus 34884	GGG\|GTTGGTGAGA...TTCCCCTTCCCC/CTGACCATCATT...CCTAG\|ATT	1	1	12.097
30725481	GT-AG	1.000000099473604e-05	198	rna-XM_025893005.1 5982093	2	1381250	1381447	Callorhinus ursinus 34884	CTG\|GTATGAAAAA...TTCCTCTTCCTC/CCCAAGTTTATG...TCCAG\|GTA	2	1	25.5
30725482	GT-AG	1.000000099473604e-05	235	rna-XM_025893005.1 5982093	3	1381633	1381867	Callorhinus ursinus 34884	TGG\|GTAATTTGAA...ATGACCACACAC/AATGACCACACA...TCCAG\|TGA	1	1	41.601
30725483	GT-AG	1.000000099473604e-05	419	rna-XM_025893005.1 5982093	4	1382008	1382426	Callorhinus ursinus 34884	ACT\|GTGAGTGACC...TCTTCTTTAGAC/CTCTCCCTCACT...CCAAG\|GAA	0	1	53.786
30725484	GT-AG	1.000000099473604e-05	555	rna-XM_025893005.1 5982093	5	1382590	1383144	Callorhinus ursinus 34884	AGG\|GTAAAATGGG...TTCTTCTTCTTT/TGTTAGGTCACT...TGTAG\|AGA	1	1	67.972
30725485	GT-AG	1.000000099473604e-05	265	rna-XM_025893005.1 5982093	6	1383242	1383506	Callorhinus ursinus 34884	ACG\|GTGAGATTTC...CCCTCTTTCTCC/ACGAGTGTAACC...TTCAG\|GAT	2	1	76.414
30725486	GT-AG	1.000000099473604e-05	350	rna-XM_025893005.1 5982093	7	1383577	1383926	Callorhinus ursinus 34884	TCG\|GTGAGAACAC...GGTCTTTTACTC/CTGCGCCTAATT...TTTAG\|GCC	0	1	82.507

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);