WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 5963375

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
30551864	GT-AG	1.000000099473604e-05	5766	rna-XM_042332593.1 5963375	1	83870912	83876677	Callorhinchus milii 7868	AAG\|GTTGGTGTTC...TTTTCTCTATCA/TTCTCTATCATT...TTTAG\|GGC	2	1	0.291
30551865	GT-AG	1.000000099473604e-05	12599	rna-XM_042332593.1 5963375	2	83876879	83889477	Callorhinchus milii 7868	GAG\|GTGAGATGAC...TCTCCATTAGTT/AGTTTATTTATA...TCTAG\|ATT	2	1	3.736
30551866	GT-AG	1.000000099473604e-05	5082	rna-XM_042332593.1 5963375	3	83890917	83895998	Callorhinchus milii 7868	CTG\|GTTAGTGATA...ATGTTCTTGCTT/GGTTAGCTGAAT...CCCAG\|GAA	1	1	28.398
30551867	GT-AG	1.000000099473604e-05	1160	rna-XM_042332593.1 5963375	4	83896082	83897241	Callorhinchus milii 7868	CAG\|GTGTGTGTAC...AGGAACTTGATT/TGATTATTCATG...TATAG\|CTT	0	1	29.82
30551868	GT-AG	5.4113886078577294e-05	1035	rna-XM_042332593.1 5963375	5	83897332	83898366	Callorhinchus milii 7868	TCT\|GTAAGTAGCC...TTGTTTTTATTT/TTTGTTTTTATT...CACAG\|GAG	0	1	31.362
30551869	GT-AG	1.0651913575616194e-05	1401	rna-XM_042332593.1 5963375	6	83898483	83899883	Callorhinchus milii 7868	TAG\|GTAATCAGTT...ATTTCTTTCTTT/TTATAAATGATT...TCTAG\|GGC	2	1	33.35
30551870	GT-AG	0.055550105962428	377	rna-XM_042332593.1 5963375	7	83900069	83900445	Callorhinchus milii 7868	TGG\|GTAACTTTTT...GTGTGCTTAAAT/ATATTTATCATT...TTCAG\|ATG	1	1	36.521

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);