WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 5774032

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
29499536	GT-AG	1.000000099473604e-05	150	rna-XM_020354870.2 5774032	2	7078761	7078910	Cajanus cajan 3821	AAG\|GTACTAGCAG...TTGATCTCAATA/TTTGATCTCAAT...GACAG\|ATA	2	1	20.944
29499537	GT-AG	1.000000099473604e-05	698	rna-XM_020354870.2 5774032	3	7077854	7078551	Cajanus cajan 3821	AGG\|GTAAGGGAAA...TTATCTTCATCT/TTATGACTCATT...TGCAG\|GAG	1	1	29.234
29499538	GT-AG	0.0057097245073765	825	rna-XM_020354870.2 5774032	4	7076684	7077508	Cajanus cajan 3821	AAC\|GTATGTTACT...AATATTATAATA/TTGAAATTCATT...CGCAG\|ACC	1	1	42.919
29499539	GT-AG	0.0002456229419323	95	rna-XM_020354870.2 5774032	5	7076324	7076418	Cajanus cajan 3821	TGG\|GTAATTTTTC...CATACCATATCT/CCATATCTTATG...GGCAG\|CCA	2	1	53.431
29499540	GT-AG	4.3500637097268543e-05	101	rna-XM_020354870.2 5774032	6	7075955	7076055	Cajanus cajan 3821	AAG\|GTAATCATTC...TTATGCTTATTA/TTTATGCTTATT...GTCAG\|GGC	0	1	64.062
29499541	GT-AG	0.0001030870683465	674	rna-XM_020354870.2 5774032	7	7075155	7075828	Cajanus cajan 3821	GCT\|GTAAGTAGCT...CCTTTCTTATTC/ACCTTTCTTATT...TGCAG\|CCT	0	1	69.06
29499542	GT-AG	0.0008169300619448	850	rna-XM_020354870.2 5774032	8	7074241	7075090	Cajanus cajan 3821	GAG\|GTACCAACTT...TTGTTTGTAATT/TTGTTTGTAATT...CACAG\|AAT	1	1	71.599
29499543	GT-AG	1.000000099473604e-05	579	rna-XM_020354870.2 5774032	9	7073495	7074073	Cajanus cajan 3821	GAG\|GTCAGTTGTA...TCTTCTTTAGCT/AGCTTTCTCATT...GTCAG\|GGT	0	1	78.223
29503015	GT-AG	1.000000099473604e-05	201	rna-XM_020354870.2 5774032	1	7079322	7079522	Cajanus cajan 3821	TGG\|GTGGTGCTCT...ATTTTTTTATTG/GTTAAGTTGACT...TGAAG\|GGG		0	7.18

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);