WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 5774007

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
29499322	GT-AG	1.000000099473604e-05	2043	rna-XM_020362228.1 5774007	1	8967401	8969443	Cajanus cajan 3821	CAA\|GTGAGTTCCA...CTCTCCTTATCT/TTCTATCTGACC...TGAAG\|CAA	1	1	7.632
29499323	GT-AG	1.000000099473604e-05	220	rna-XM_020362228.1 5774007	2	8966912	8967131	Cajanus cajan 3821	AAG\|GTTAGAATTA...GCTCTTTTATAT/ATATGATTAATT...AACAG\|TCA	0	1	18.107
29499324	GT-AG	1.000000099473604e-05	627	rna-XM_020362228.1 5774007	3	8966044	8966670	Cajanus cajan 3821	CAG\|GTTATTTAAT...TTTTTCTTTGTT/TTTGTTGTCATA...TGCAG\|ACC	1	1	27.492
29499325	GT-AG	1.000000099473604e-05	1229	rna-XM_020362228.1 5774007	4	8964491	8965719	Cajanus cajan 3821	AAA\|GTAAGTAAAG...GTTTCCTTATTG/AGTTTCCTTATT...TGTAG\|GGG	1	1	40.109
29499326	GC-AG	1.000000099473604e-05	495	rna-XM_020362228.1 5774007	5	8963910	8964404	Cajanus cajan 3821	AAG\|GCAAGAGTAG...TAATTTTTAAAT/GTTCTATTCATA...TTTAG\|GAA	0	1	43.458
29499327	GT-AG	0.0003462038096248	80	rna-XM_020362228.1 5774007	6	8963719	8963798	Cajanus cajan 3821	GAG\|GTACCATAGC...ATGGATTTATTG/CATGGATTTATT...TGCAG\|GCC	0	1	47.78
29499328	GT-AG	1.000000099473604e-05	436	rna-XM_020362228.1 5774007	7	8962969	8963404	Cajanus cajan 3821	TTG\|GTAAGTACTA...GCTAACTTAGTT/GTAGTGCTAACT...TGTAG\|GTT	2	1	60.008
29499329	GT-AG	0.0024617931695156	105	rna-XM_020362228.1 5774007	8	8962597	8962701	Cajanus cajan 3821	AAG\|GTATATACTA...TTTCTCTTATTG/TTTTCTCTTATT...TTTAG\|AGG	2	1	70.405

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);