introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 5773999

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
29499249 GT-AG 0 0.0090962011151737 2489 rna-XM_029271135.1 5773999 1 7743238 7745726 Cajanus cajan 3821 CAA|GTACGTTTCT...TTGGTTTTGATG/TATGTATTAACA...AAAAG|GGA 1 1 14.164
29499250 GT-AG 0 1.000000099473604e-05 3941 rna-XM_029271135.1 5773999 2 7745999 7749939 Cajanus cajan 3821 AAG|GTAATTTATT...GAAGTTTTGAGA/GAAGTTTTGAGA...AACAG|GCT 0 1 24.249
29499251 GT-AG 0 1.000000099473604e-05 1840 rna-XM_029271135.1 5773999 3 7750178 7752017 Cajanus cajan 3821 CCG|GTCAGTTTCA...CTTCTCTTTACG/GTTGTTTTCATC...GACAG|ATA 1 1 33.074
29499252 GT-AG 0 1.000000099473604e-05 78 rna-XM_029271135.1 5773999 4 7752306 7752383 Cajanus cajan 3821 CAA|GTAAGTTAAA...TGCTTATTATCA/TTGCTTATTATC...TTCAG|GGG 1 1 43.752
29499253 GT-AG 0 1.000000099473604e-05 186 rna-XM_029271135.1 5773999 5 7752467 7752652 Cajanus cajan 3821 AAG|GTAATTATAA...CTTTCATTAATT/TGTTCTTTCATT...TATAG|GTT 0 1 46.83
29499254 GT-AG 0 1.000000099473604e-05 81 rna-XM_029271135.1 5773999 6 7752761 7752841 Cajanus cajan 3821 CAG|GTACAGAAAA...CTGCTTTTAAAA/AAATGTTTAATA...TATAG|GTG 0 1 50.834
29499255 GT-AG 0 1.000000099473604e-05 228 rna-XM_029271135.1 5773999 7 7753144 7753371 Cajanus cajan 3821 TTG|GTAAGATATG...GTTATCTTATAA/TGTTATCTTATA...AACAG|GTT 2 1 62.032
29499256 AA-AT 0 1.000000099473604e-05 226 rna-XM_029271135.1 5773999 8 7753637 7753862 Cajanus cajan 3821 ATA|AAGGTAACAA...GTATGCTAGACA/TGAGATCTAATA...TATAT|AGG 0 1 71.858

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);