WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 5773995

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
29499212	GT-AG	1.000000099473604e-05	545	rna-XM_020349500.2 5773995	4	7702197	7702741	Cajanus cajan 3821	AAG\|GTAAGATATA...AGCTTTTTATCT/TAGCTTTTTATC...AACAG\|GTT	0	1	68.07
29499213	GT-AG	1.000000099473604e-05	359	rna-XM_020349500.2 5773995	5	7701700	7702058	Cajanus cajan 3821	AAG\|GTGATGGCCA...TCACTTTTATAT/AACTGTCTAATT...ATCAG\|GAC	0	1	71.37
29499214	GT-AG	1.000000099473604e-05	77	rna-XM_020349500.2 5773995	6	7701188	7701264	Cajanus cajan 3821	CAG\|GTTAAAAATT...ATTACTTTGATC/AAGTGACTTACT...TGCAG\|GTA	0	1	81.775
29499215	GT-AG	1.000000099473604e-05	208	rna-XM_020349500.2 5773995	7	7700916	7701123	Cajanus cajan 3821	CTG\|GTGCGTACTA...TGTTCATTGACC/ACAATGTTCATT...AACAG\|AAA	1	1	83.305
29499216	GT-AG	0.0246858260365855	249	rna-XM_020349500.2 5773995	8	7700527	7700775	Cajanus cajan 3821	CCT\|GTAAGCTTTT...GTTGCCATGACA/AAATCTCTCATG...TGCAG\|ATG	0	1	86.654
29499217	GT-AG	1.000000099473604e-05	551	rna-XM_020349500.2 5773995	9	7699664	7700214	Cajanus cajan 3821	AAG\|GTAAAATTAC...TGAACCTGACAA/TTGAACCTGACA...TGCAG\|CAT	0	1	94.116
29502998	GT-AG	0.0002589982058089	1455	rna-XM_020349500.2 5773995	1	7705445	7706899	Cajanus cajan 3821	ATG\|GTACTTTCCC...CTTTTCGTATTG/GAAGAATTCACT...TGCAG\|GTT		0	9.519
29502999	GT-AG	1.000000099473604e-05	140	rna-XM_020349500.2 5773995	2	7704415	7704554	Cajanus cajan 3821	AAG\|GTAAGGATCA...AAATTCTGAATA/TTATTTTTCATG...CACAG\|GTC		0	30.806
29503000	GT-AG	1.000000099473604e-05	104	rna-XM_020349500.2 5773995	3	7704199	7704302	Cajanus cajan 3821	CTG\|GTGAGAACTC...GTGTTTTTAATA/GTGTTTTTAATA...GATAG\|GCA		0	33.485

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);