WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 5773975

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
29499017	GT-AG	1.000000099473604e-05	950	rna-XM_020356284.2 5773975	1	4809215	4810164	Cajanus cajan 3821	CAG\|GTTATGTTTT...TTTTCCTTTCTC/CCACAACTCAAA...TTCAG\|GCA	0	1	1.767
29499018	GT-AG	0.0005647938235072	476	rna-XM_020356284.2 5773975	2	4808652	4809127	Cajanus cajan 3821	CAG\|GTATGCATAA...CTTTCTTTCCCT/CTTCATTTCATC...TCTAG\|GAT	0	1	4.465
29499019	GT-AG	3.4238901179971744e-05	123	rna-XM_020356284.2 5773975	3	4808439	4808561	Cajanus cajan 3821	AAT\|GTACGTAACA...CATGTTTTGGTC/TTTGGTCTAATA...TTCAG\|ATA	0	1	7.256
29499020	GT-AG	3.03103600385994e-05	90	rna-XM_020356284.2 5773975	4	4808262	4808351	Cajanus cajan 3821	CTG\|GTAATATTTG...CTTGACTTAACT/TGTTTATTTACA...TATAG\|ATA	0	1	9.953
29499021	GT-AG	0.0016930330009821	2775	rna-XM_020356284.2 5773975	5	4805292	4808066	Cajanus cajan 3821	CAG\|GTTTCATACA...AATATTTTATCA/TTTGTTGTTATT...TGAAG\|GTA	0	1	16.0
29499022	GT-AG	1.000000099473604e-05	641	rna-XM_020356284.2 5773975	6	4802569	4803209	Cajanus cajan 3821	GAG\|GTAGTGACTC...ATTGTGTTAACT/TATGTATTGATT...GACAG\|GCT	0	1	80.558
29499023	GT-AG	0.0001115382187675	480	rna-XM_020356284.2 5773975	7	4801942	4802421	Cajanus cajan 3821	AGG\|GTAAGTTCTT...TTGGCCTTAAAT/TTAAATTTTATT...TTCAG\|CTT	0	1	85.116
29499024	GT-AG	1.000000099473604e-05	481	rna-XM_020356284.2 5773975	8	4801102	4801582	Cajanus cajan 3821	TAG\|GTAATGTCTA...GGTGTCTGAATG/TGGTGTCTGAAT...TGCAG\|CCG	2	1	96.248

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);