WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 5773958

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
29498903	GT-AG	5.028429142486728e-05	817	rna-XM_020358896.2 5773958	1	1177217	1178033	Cajanus cajan 3821	ATG\|GTAATTTCCA...TTGTTCTGAATG/ATTGTTCTGAAT...TACAG\|CTT	0	1	11.025
29498904	GT-AG	0.0084875361030874	82	rna-XM_020358896.2 5773958	2	1177022	1177103	Cajanus cajan 3821	GAG\|GTATTGTTAA...AAGACCTTGACT/ATTTATTTCACG...TGCAG\|TGA	2	1	13.93
29498905	GT-AG	0.0002996495043986	685	rna-XM_020358896.2 5773958	3	1176161	1176845	Cajanus cajan 3821	TCG\|GTCCGTTATC...TGTCTCTTGACT/ATAACTTTCATT...ATTAG\|CAC	1	1	18.453
29498906	GT-AG	1.000000099473604e-05	539	rna-XM_020358896.2 5773958	4	1175313	1175851	Cajanus cajan 3821	CAG\|GTGAGAACTT...TTACCCTTACTG/TTTACCCTTACT...AACAG\|AGT	1	1	26.394
29498907	GT-AG	1.000000099473604e-05	95	rna-XM_020358896.2 5773958	5	1174254	1174348	Cajanus cajan 3821	AAG\|GTACTTGAAC...ATTTCTCTGACT/ATTTCTCTGACT...GCCAG\|ACT	2	1	51.169
29498908	GT-AG	1.000000099473604e-05	571	rna-XM_020358896.2 5773958	6	1172974	1173544	Cajanus cajan 3821	AAG\|GTGAGAGTAG...ATTGTTCTAATA/ACGTTATTCACT...TGCAG\|ATG	0	1	69.391
29498909	GT-AG	0.0001487407588671	171	rna-XM_020358896.2 5773958	7	1172522	1172692	Cajanus cajan 3821	AAG\|GTATGTCGGT...CAATCCTAAATT/TCAATCCTAAAT...TATAG\|CTT	2	1	76.613
29498910	GT-AG	0.0001710885995984	445	rna-XM_020358896.2 5773958	8	1171410	1171854	Cajanus cajan 3821	CAG\|GTAACTCCTT...GGTTATTTAAAT/ATTTCTGTTATT...TACAG\|GAA	0	1	93.755

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);