introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 5773947

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
29498738 GT-AG 0 2.474801805327849e-05 95 rna-XM_020364309.2 5773947 1 1795460 1795554 Cajanus cajan 3821 CAG|GTACTTACCG...TTTGTATTAATG/TTTGTATTAATG...AGCAG|GGG 0 1 1.913
29498739 GT-AG 0 1.000000099473604e-05 87 rna-XM_020364309.2 5773947 2 1795867 1795953 Cajanus cajan 3821 CAG|GTTTGTGGTT...CATTTCTTTTTT/CGAGTACTCATC...GGCAG|GAA 0 1 7.439
29498740 GT-AG 0 1.000000099473604e-05 358 rna-XM_020364309.2 5773947 3 1799026 1799383 Cajanus cajan 3821 GAG|GTAATATTGT...TTTTTCTTATAT/TGTTTTTTCATT...TCCAG|GAA 0 1 61.849
29498741 GT-AG 0 1.000000099473604e-05 105 rna-XM_020364309.2 5773947 4 1800561 1800665 Cajanus cajan 3821 AAG|GTAAAAAAAT...TATGACTTGATT/TGTTGATTTACT...GGCAG|AAA 1 1 82.696
29498742 GT-AG 0 1.000000099473604e-05 449 rna-XM_020364309.2 5773947 5 1801310 1801758 Cajanus cajan 3821 GAG|GTGGTAAATT...GTTATCTTCTTT/ATTTAAGTGATC...CACAG|GGA 0 1 94.102
29498743 GT-AG 0 1.000000099473604e-05 75 rna-XM_020364309.2 5773947 6 1801907 1801981 Cajanus cajan 3821 AAG|GTAATTACGA...AATTGCTTGATT/AATTGCTTGATT...TGCAG|GCC 1 1 96.723
29498744 GT-AG 0 7.509553899213147e-05 704 rna-XM_020364309.2 5773947 7 1802064 1802767 Cajanus cajan 3821 CTG|GTAAATTCCT...ACATTCTTAAAT/ATGTTTATAATT...TGCAG|GGT 2 1 98.176

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);