WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 5460309

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
28028837	GT-AG	1.000000099473604e-05	3314	rna-XM_010136473.1 5460309	2	74331	77644	Buceros rhinoceros 175835	TAG\|GTGAGTGGGT...ATCTTTTCAACC/TGTTTATTTATA...TTCAG\|GAC	1	1	6.748
28028838	GT-AG	1.000000099473604e-05	621	rna-XM_010136473.1 5460309	3	73600	74220	Buceros rhinoceros 175835	AAG\|GTAAGTCCAC...TTTCCTTTGGTC/GAGGATTTCACG...CCTAG\|GAT	0	1	14.17
28028839	GT-AG	1.000000099473604e-05	2260	rna-XM_010136473.1 5460309	4	71199	73458	Buceros rhinoceros 175835	CAG\|GTAAAGTTTC...GATACTATATCA/TACTATATCATG...TGCAG\|GAT	0	1	23.684
28028840	GT-AG	1.000000099473604e-05	5388	rna-XM_010136473.1 5460309	5	65706	71093	Buceros rhinoceros 175835	CAT\|GTGAGTTTTT...CTTTCATTAAAT/ACCTCTTTCATT...ATTAG\|GGT	0	1	30.769
28028841	GT-AG	0.0001023051746894	8735	rna-XM_010136473.1 5460309	6	56925	65659	Buceros rhinoceros 175835	AAA\|GTAAGTTCTT...CAAACTTTGATC/TTGTTTCTCACT...TGCAG\|AGC	1	1	33.873
28028842	GT-AG	1.000000099473604e-05	5833	rna-XM_010136473.1 5460309	7	50762	56594	Buceros rhinoceros 175835	CAG\|GTAGGGCAAG...TTTGTCTGATCT/TTTTGTCTGATC...ATTAG\|GCT	1	1	56.14
28028843	GT-AG	1.000000099473604e-05	37324	rna-XM_010136473.1 5460309	8	13101	50424	Buceros rhinoceros 175835	CCG\|GTAAGTGTGG...GGGGCTTTGTTC/CCCTGGCTAATT...TGCAG\|GTC	2	1	78.88
28028844	GT-AG	1.000000099473604e-05	6196	rna-XM_010136473.1 5460309	9	6774	12969	Buceros rhinoceros 175835	CAG\|GTAAGTGTTT...TCCTTTTTACTG/TTCCTTTTTACT...TTCAG\|CAA	1	1	87.719

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);