introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 529188

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
2995002 GT-AG 0 1.000000099473604e-05 1751 rna-XM_031703151.1 529188 1 304764 306514 Actinia tenebrosa 6105 GAG|GTAATGTGAG...ACTGTTTTATTT/AACTGTTTTATT...TGCAG|GAT 0 1 27.984
2995003 GT-AG 0 4.914170990298924e-05 96 rna-XM_031703151.1 529188 2 306582 306677 Actinia tenebrosa 6105 ACG|GTAAGCAAAC...TCGTTCTTAATC/TCGTTCTTAATC...TGTAG|AAT 1 1 30.946
2995004 GT-AG 0 1.000000099473604e-05 363 rna-XM_031703151.1 529188 3 306863 307225 Actinia tenebrosa 6105 GAC|GTAAGTATAC...TTCTTCTAATTC/ATTCTTCTAATT...TGTAG|CCC 0 1 39.125
2995005 GT-AG 0 1.000000099473604e-05 527 rna-XM_031703151.1 529188 4 307305 307831 Actinia tenebrosa 6105 TTG|GTGAGTCCTT...GAGGTTTGAATA/CGAGGTTTGAAT...AACAG|AGA 1 1 42.617
2995006 GT-AG 0 1.000000099473604e-05 435 rna-XM_031703151.1 529188 5 307897 308331 Actinia tenebrosa 6105 AAG|GTAAAACACG...GAATGCTTATTT/TTTTGGTTCATT...TTAAG|GCT 0 1 45.491
2995007 GT-AG 0 1.000000099473604e-05 557 rna-XM_031703151.1 529188 6 308399 308955 Actinia tenebrosa 6105 AAG|GTTAGTATTA...GCTTCTTTTGTT/GCTATAGTTATA...TAAAG|TGG 1 1 48.453
2995008 GT-AG 0 3.656312808226649e-05 171 rna-XM_031703151.1 529188 7 309993 310163 Actinia tenebrosa 6105 CAG|GTACGTAATC...ACTTTTTTAACA/ACTTTTTTAACA...CCCAG|GAT 0 1 94.297

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);