introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 529147

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
2994435 GT-AG 0 1.6938960439215025e-05 198 rna-XM_031699873.1 529147 1 158818 159015 Actinia tenebrosa 6105 AGG|GTAAGCCAAA...AACCTCTTGATT/TCGTTGGTCATT...TCCAG|GAA 0 1 8.271
2994436 GT-AG 0 1.000000099473604e-05 539 rna-XM_031699873.1 529147 2 159125 159663 Actinia tenebrosa 6105 GAG|GTTAGTTAAT...TGATTATTAACA/TTTTTGCTCAAT...CACAG|GTA 1 1 21.93
2994437 GT-AG 0 2.9505755906944927e-05 131 rna-XM_031699873.1 529147 3 159811 159941 Actinia tenebrosa 6105 CCA|GTAAGCCCAC...ACAATTTTATAT/TTATATATAATT...TTTAG|TGA 1 1 40.351
2994438 GT-AG 0 2.2682336480276537e-05 543 rna-XM_031699873.1 529147 4 160020 160562 Actinia tenebrosa 6105 AAG|GTACAATAAA...AAAATTTTAATC/AAAATTTTAATC...TAAAG|TAA 1 1 50.125
2994439 GT-AG 0 0.0010110296184678 114 rna-XM_031699873.1 529147 5 160647 160760 Actinia tenebrosa 6105 CAG|GTATAGTTAA...GGTGTTTTAGCT/TTTTAGCTCACT...CATAG|GAA 1 1 60.652
2994440 GT-AG 0 0.0017668805207318 770 rna-XM_031699873.1 529147 6 160847 161616 Actinia tenebrosa 6105 AAG|GTAACTAGTT...GCTGCCTTGATA/GCTGCCTTGATA...TATAG|GGT 0 1 71.429
2994441 GT-AG 0 3.911353132468217e-05 456 rna-XM_031699873.1 529147 7 161713 162168 Actinia tenebrosa 6105 AAG|GTATGAATTG...ATTTCTTTCCCA/GCACTACTAACT...TACAG|CTG 0 1 83.459

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);