WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 4520959

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
23578628	GT-AG	0.0067699607725604	1630	rna-XM_019959872.1 4520959	1	8965411	8967040	Bos indicus 9915	CAG\|GTATCAGTCC...CTATTCTTGGCG/AAGCAAATGATC...TACAG\|GAA	1	1	25.369
23578629	GT-AG	1.000000099473604e-05	512	rna-XM_019959872.1 4520959	2	8967388	8967899	Bos indicus 9915	CAG\|GTGAGAGGAA...TGTGTATTAATA/TGTGTATTAATA...TGTAG\|GAC	0	1	37.281
23578630	GT-AG	1.000000099473604e-05	386	rna-XM_019959872.1 4520959	3	8968033	8968418	Bos indicus 9915	TAG\|GTAAGTCTAT...CATGTTTTAATG/CATGTTTTAATG...CTTAG\|GTC	1	1	41.847
23578631	GT-AG	1.000000099473604e-05	441	rna-XM_019959872.1 4520959	4	8968587	8969027	Bos indicus 9915	ATG\|GTAAGACACT...GTGCCTTTAGTT/TTAACATTCATT...TGCAG\|GTG	1	1	47.614
23578632	GT-AG	1.000000099473604e-05	223	rna-XM_019959872.1 4520959	5	8969315	8969537	Bos indicus 9915	GAT\|GTGAGTTATC...AGGATTCTAACA/AGGATTCTAACA...TTTAG\|ACC	0	1	57.467
23578633	GT-AG	1.000000099473604e-05	89	rna-XM_019959872.1 4520959	6	8969725	8969813	Bos indicus 9915	ACG\|GTGAGCAGAG...ATCTCCTTCTCT/AACGTCATCATC...TCCAG\|GAA	1	1	63.886
23578634	GT-AG	3.7210858152305934e-05	988	rna-XM_019959872.1 4520959	7	8969990	8970977	Bos indicus 9915	AAG\|GTAGTCACTT...TTGGCCTTGTTA/TGTTAATTAACA...TTCAG\|GTG	0	1	69.928
23578635	GT-AG	1.000000099473604e-05	170	rna-XM_019959872.1 4520959	8	8971154	8971323	Bos indicus 9915	AAA\|GTAAGTGTTA...TTCTCTCTATTT/CAGTGACTGAGA...TGCAG\|ACC	2	1	75.97

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);