introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 442596
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2569181 | GT-AG | 0 | 1.000000099473604e-05 | 10956 | rna-XM_044308713.1 442596 | 1 | 37271890 | 37282845 | Acropora millepora 45264 | CTG|GTGAGTTTTT...TTTTTTTTTGCT/TTTTTGCTCAAG...TCTAG|GTT | 0 | 1 | 0.987 |
2569182 | GT-AG | 0 | 1.000000099473604e-05 | 637 | rna-XM_044308713.1 442596 | 2 | 37283096 | 37283732 | Acropora millepora 45264 | AGG|GTAAGAACCA...TTTCCTTTTGTT/CTTTTGTTCACT...ACCAG|GAA | 1 | 1 | 2.214 |
2569183 | GT-AG | 0 | 1.000000099473604e-05 | 199 | rna-XM_044308713.1 442596 | 5 | 37295774 | 37295972 | Acropora millepora 45264 | AAG|GTAATTGATA...TTGCTTTTAATT/TTGCTTTTAATT...TATAG|GTG | 1 | 1 | 61.325 |
2569184 | GT-AG | 0 | 1.000000099473604e-05 | 311 | rna-XM_044308713.1 442596 | 6 | 37297595 | 37297905 | Acropora millepora 45264 | CAG|GTAAGATTGC...GTCCTGTTAAAC/GTCCTGTTAAAC...TTTAG|GTC | 0 | 1 | 69.289 |
2569185 | GT-AG | 0 | 1.000000099473604e-05 | 435 | rna-XM_044308713.1 442596 | 7 | 37298546 | 37298980 | Acropora millepora 45264 | CAG|GTAAATGGGA...TATTTTTTTCCC/AATATTATAAAT...TTCAG|CAC | 1 | 1 | 72.431 |
2569186 | GT-AG | 0 | 0.0002121381825451 | 950 | rna-XM_044308713.1 442596 | 8 | 37299521 | 37300470 | Acropora millepora 45264 | CTG|GTAAGTTTTC...TCGTCTTTAATT/TCGTCTTTAATT...TATAG|GAT | 1 | 1 | 75.082 |
2569187 | GT-AG | 0 | 1.000000099473604e-05 | 1165 | rna-XM_044308713.1 442596 | 9 | 37300661 | 37301825 | Acropora millepora 45264 | CAG|GTGAGCAGAC...TTTCTCTTACCC/CTTTCTCTTACC...CCCAG|TTG | 2 | 1 | 76.015 |
2569188 | GT-AG | 0 | 2.191095259036402e-05 | 993 | rna-XM_044308713.1 442596 | 10 | 37305166 | 37306158 | Acropora millepora 45264 | CAA|GTAAGCAAAC...TATATTTTATCT/ATATATTTTATC...TGTAG|GTC | 0 | 1 | 92.414 |
2569189 | GT-AG | 0 | 9.188647613732104e-05 | 912 | rna-XM_044308713.1 442596 | 11 | 37306663 | 37307574 | Acropora millepora 45264 | AAG|GTTTGTGTTT...TCTGCTTTGACC/TTTATTCTAATA...GTTAG|CAA | 0 | 1 | 94.889 |
2569190 | GT-AG | 0 | 6.463662543084937e-05 | 818 | rna-XM_044308713.1 442596 | 12 | 37307793 | 37308610 | Acropora millepora 45264 | TTG|GTAAGCTATT...ATTCATTTATCT/CATTCATTTATC...TCAAG|GAC | 2 | 1 | 95.959 |
2569191 | GT-AG | 0 | 0.000141720759701 | 370 | rna-XM_044308713.1 442596 | 13 | 37308766 | 37309135 | Acropora millepora 45264 | CAA|GTAAGCATAA...GAATTTTTATCC/TAAGTTCTAATC...TTCAG|TTT | 1 | 1 | 96.72 |
2569192 | GT-AG | 0 | 1.000000099473604e-05 | 858 | rna-XM_044308713.1 442596 | 14 | 37309596 | 37310453 | Acropora millepora 45264 | AAG|GTTAATAGAA...TTTTTCTCATTT/CTTTTTCTCATT...TTTAG|GAT | 2 | 1 | 98.979 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);