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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 442596

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
2569181 GT-AG 0 1.000000099473604e-05 10956 rna-XM_044308713.1 442596 1 37271890 37282845 Acropora millepora 45264 CTG|GTGAGTTTTT...TTTTTTTTTGCT/TTTTTGCTCAAG...TCTAG|GTT 0 1 0.987
2569182 GT-AG 0 1.000000099473604e-05 637 rna-XM_044308713.1 442596 2 37283096 37283732 Acropora millepora 45264 AGG|GTAAGAACCA...TTTCCTTTTGTT/CTTTTGTTCACT...ACCAG|GAA 1 1 2.214
2569183 GT-AG 0 1.000000099473604e-05 199 rna-XM_044308713.1 442596 5 37295774 37295972 Acropora millepora 45264 AAG|GTAATTGATA...TTGCTTTTAATT/TTGCTTTTAATT...TATAG|GTG 1 1 61.325
2569184 GT-AG 0 1.000000099473604e-05 311 rna-XM_044308713.1 442596 6 37297595 37297905 Acropora millepora 45264 CAG|GTAAGATTGC...GTCCTGTTAAAC/GTCCTGTTAAAC...TTTAG|GTC 0 1 69.289
2569185 GT-AG 0 1.000000099473604e-05 435 rna-XM_044308713.1 442596 7 37298546 37298980 Acropora millepora 45264 CAG|GTAAATGGGA...TATTTTTTTCCC/AATATTATAAAT...TTCAG|CAC 1 1 72.431
2569186 GT-AG 0 0.0002121381825451 950 rna-XM_044308713.1 442596 8 37299521 37300470 Acropora millepora 45264 CTG|GTAAGTTTTC...TCGTCTTTAATT/TCGTCTTTAATT...TATAG|GAT 1 1 75.082
2569187 GT-AG 0 1.000000099473604e-05 1165 rna-XM_044308713.1 442596 9 37300661 37301825 Acropora millepora 45264 CAG|GTGAGCAGAC...TTTCTCTTACCC/CTTTCTCTTACC...CCCAG|TTG 2 1 76.015
2569188 GT-AG 0 2.191095259036402e-05 993 rna-XM_044308713.1 442596 10 37305166 37306158 Acropora millepora 45264 CAA|GTAAGCAAAC...TATATTTTATCT/ATATATTTTATC...TGTAG|GTC 0 1 92.414
2569189 GT-AG 0 9.188647613732104e-05 912 rna-XM_044308713.1 442596 11 37306663 37307574 Acropora millepora 45264 AAG|GTTTGTGTTT...TCTGCTTTGACC/TTTATTCTAATA...GTTAG|CAA 0 1 94.889
2569190 GT-AG 0 6.463662543084937e-05 818 rna-XM_044308713.1 442596 12 37307793 37308610 Acropora millepora 45264 TTG|GTAAGCTATT...ATTCATTTATCT/CATTCATTTATC...TCAAG|GAC 2 1 95.959
2569191 GT-AG 0 0.000141720759701 370 rna-XM_044308713.1 442596 13 37308766 37309135 Acropora millepora 45264 CAA|GTAAGCATAA...GAATTTTTATCC/TAAGTTCTAATC...TTCAG|TTT 1 1 96.72
2569192 GT-AG 0 1.000000099473604e-05 858 rna-XM_044308713.1 442596 14 37309596 37310453 Acropora millepora 45264 AAG|GTTAATAGAA...TTTTTCTCATTT/CTTTTTCTCATT...TTTAG|GAT 2 1 98.979

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.581ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)