WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 4378540

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
22667881	GT-AG	1.000000099473604e-05	5120	rna-XM_020920144.1 4378540	2	10889308	10894427	Boleophthalmus pectinirostris 150288	AAG\|GTAAGGCACA...CCCGCATTATCT/AATAAGTTGACC...GGCAG\|GAA	1	1	21.156
22667882	GT-AG	1.000000099473604e-05	16746	rna-XM_020920144.1 4378540	3	10872312	10889057	Boleophthalmus pectinirostris 150288	CAG\|GTACAAATAC...TTTTGCTTAAAA/TTTTTGCTTAAA...TGTAG\|TGA	2	1	28.492
22667883	GT-AG	1.000000099473604e-05	2207	rna-XM_020920144.1 4378540	4	10869869	10872075	Boleophthalmus pectinirostris 150288	CTG\|GTAAGTCTGC...ATATTTATATTT/TTTATATTTACA...TGTAG\|GTA	1	1	35.417
22667884	GT-AG	1.000000099473604e-05	3589	rna-XM_020920144.1 4378540	5	10866033	10869621	Boleophthalmus pectinirostris 150288	AAG\|GTACAGAGGA...ATGTTTTTATCT/GATGTTTTTATC...TTCAG\|GTA	2	1	42.664
22667885	GT-AG	1.000000099473604e-05	925	rna-XM_020920144.1 4378540	6	10864939	10865863	Boleophthalmus pectinirostris 150288	AAG\|GTACAGCAAA...TTTCCCATAACC/CAGTGTGTTATC...TGCAG\|GTG	0	1	47.623
22667886	GT-AG	1.000000099473604e-05	2850	rna-XM_020920144.1 4378540	7	10861962	10864811	Boleophthalmus pectinirostris 150288	CAG\|GTAAGACGAA...CCCGCTTTAATC/TTTAATCTAAAA...CGCAG\|GTT	1	1	51.35
22667887	GT-AG	1.000000099473604e-05	2073	rna-XM_020920144.1 4378540	8	10858955	10861027	Boleophthalmus pectinirostris 150288	CAA\|GTGAGTGATC...GGTTTCCTGACA/GGTTTCCTGACA...CATAG\|TTC	2	1	78.756

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);