WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 4181782

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
21587170	GT-AG	1.783608724650474e-05	4303	rna-XM_010690434.2 4181782	1	34611508	34615810	Beta vulgaris 161934	CTG\|GTAATTAATT...CTAACCTTATTC/AATTTACTCATT...ACAAG\|ATG	1	1	10.84
21587171	GT-AG	0.0002950232984926	1972	rna-XM_010690434.2 4181782	2	34609021	34610992	Beta vulgaris 161934	CTG\|GTATGTGTGG...TATGCTATATCT/ATGTTTGTAATG...TGCAG\|AAA	0	1	21.576
21587172	GT-AG	1.742998924794684e-05	699	rna-XM_010690434.2 4181782	3	34607727	34608425	Beta vulgaris 161934	CAG\|GTGAACTTCT...AATCTTTTATCT/TTTTATCTAATT...GACAG\|ATA	1	1	33.98
21587173	GT-AG	0.0006081447268003	519	rna-XM_010690434.2 4181782	4	34606717	34607235	Beta vulgaris 161934	TTG\|GTATGTATCA...ACTCACTTATAT/TATGAACTCACT...TGTAG\|AAA	0	1	44.215
21587174	GT-AG	1.000000099473604e-05	9613	rna-XM_010690434.2 4181782	5	34596533	34606145	Beta vulgaris 161934	TAG\|GTGAGTTTCT...TCCATCTTACAA/TTCCATCTTACA...TGCAG\|CAA	1	1	56.118
21587175	GT-AG	1.000000099473604e-05	518	rna-XM_010690434.2 4181782	6	34595533	34596050	Beta vulgaris 161934	ATG\|GTGAATATTA...TTTTTTTTGACT/TTTTTTTTGACT...CACAG\|AAT	0	1	66.166
21587176	GT-AG	2.4800029385421928e-05	1031	rna-XM_010690434.2 4181782	7	34593889	34594919	Beta vulgaris 161934	ACA\|GTAAGTGTCC...CTTTTCATGATT/ATGATTTTCACA...TGTAG\|ATG	1	1	78.945
21587177	GT-AG	0.0005896659283139	146	rna-XM_010690434.2 4181782	8	34593264	34593409	Beta vulgaris 161934	AAG\|GTATGTAGTA...TTAGTTTTATTT/TATTTCTTCATT...TATAG\|ATA	0	1	88.931

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);