WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 4118573

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
21287131	GT-AG	0.002498364085543	141	rna-XM_006675058.1 4118573	1	1936461	1936601	Batrachochytrium dendrobatidis 109871	CCA\|GTAAGTTTTA...TGATTCTTGAAT/TTTCATTTGATT...TTTAG\|GTC	1	1	7.189
21287132	GT-AG	1.000000099473604e-05	78	rna-XM_006675058.1 4118573	2	1936039	1936116	Batrachochytrium dendrobatidis 109871	AAA\|GTAAATACTG...TTTATTTCAGTC/TTGTTGCTCATT...GATAG\|GCT	0	1	18.279
21287133	GT-AG	0.0047583138262506	77	rna-XM_006675058.1 4118573	3	1935880	1935956	Batrachochytrium dendrobatidis 109871	AAG\|GTACCTTGAG...CTTCTTTCAATT/ACTATACTAACT...TCTAG\|GCG	1	1	20.922
21287134	GT-AG	3.096510130132163e-05	85	rna-XM_006675058.1 4118573	4	1935676	1935760	Batrachochytrium dendrobatidis 109871	CGA\|GTAAGTACAC...GTTTCCTTACAT/AGTTTCCTTACA...TCTAG\|ACA	0	1	24.758
21287135	GT-AG	7.301829603536277e-05	75	rna-XM_006675058.1 4118573	5	1935493	1935567	Batrachochytrium dendrobatidis 109871	GAG\|GTATAAATAC...TTATTCATACCA/AGTTTATTCATA...CTTAG\|ATT	0	1	28.24
21287136	GT-AG	0.0001920127201699	99	rna-XM_006675058.1 4118573	6	1935061	1935159	Batrachochytrium dendrobatidis 109871	AAG\|GTAGTTTTGA...TGTTTTTTATAA/TTGTTTTTTATA...AATAG\|ACT	0	1	38.975
21287137	GT-AG	1.000000099473604e-05	205	rna-XM_006675058.1 4118573	7	1934576	1934780	Batrachochytrium dendrobatidis 109871	TAC\|GTGATCAGGA...CTGGTTGTAGCA/ATGGCTCGAATC...AGAAG\|CTG	1	1	48.001
21287138	GT-AG	0.0002126296154397	82	rna-XM_006675058.1 4118573	8	1933548	1933629	Batrachochytrium dendrobatidis 109871	GAT\|GTAAGTTTTG...GTATTTGTAAAT/GTATTTGTAAAT...AACAG\|GGC	2	1	78.498

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);