WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 4118560

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
21287034	GT-AG	1.000000099473604e-05	116	rna-XM_006675072.1 4118560	1	3033871	3033986	Batrachochytrium dendrobatidis 109871	AAG\|GTGAGTGGCA...ATTCACTTGACT/TCATTGCTGACT...AAAAG\|GCT	0	1	0.905
21287035	GT-AG	5.864464229498853e-05	80	rna-XM_006675072.1 4118560	2	3034263	3034342	Batrachochytrium dendrobatidis 109871	AAG\|GTAGATTCTT...TCAACCCTGATT/ATTGGTTTCAAC...ACTAG\|GCA	0	1	9.231
21287036	GT-AG	0.0029290211093954	71	rna-XM_006675072.1 4118560	3	3034407	3034477	Batrachochytrium dendrobatidis 109871	ACG\|GTATTGTTGA...AAATCATTGATT/AAATCATTGATT...TTTAG\|AGG	1	1	11.161
21287037	GT-AG	0.2444094652571765	79	rna-XM_006675072.1 4118560	4	3034567	3034645	Batrachochytrium dendrobatidis 109871	AAG\|GTAGCTTTTT...TTAGTCTTGATC/TTAGTCTTGATC...ATTAG\|CAC	0	1	13.846
21287038	GT-AG	0.0010546338379005	106	rna-XM_006675072.1 4118560	5	3034784	3034889	Batrachochytrium dendrobatidis 109871	ATG\|GTAATTTTTT...TATTTTTTAAAT/TATTTTTTAAAT...TTTAG\|ACT	0	1	18.009
21287039	GT-AG	1.000000099473604e-05	54	rna-XM_006675072.1 4118560	6	3035187	3035240	Batrachochytrium dendrobatidis 109871	CGT\|GTCAAGGACA...ATCATCTGAAAA/ATTGATATCATC...TCAAG\|GCT	0	1	26.968
21287040	GT-AG	0.0003466243382747	94	rna-XM_006675072.1 4118560	7	3035553	3035646	Batrachochytrium dendrobatidis 109871	AAG\|GTATGTTCAA...TGTTTCCTGATA/GCTATTCTGACT...TTCAG\|GGA	0	1	36.38
21287041	GT-AG	0.0010738154030607	89	rna-XM_006675072.1 4118560	8	3037519	3037607	Batrachochytrium dendrobatidis 109871	AAG\|GTATAGTTTC...GATGCTGTAATT/ATTATACTGATC...GAAAG\|AAA	0	1	92.851

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);