WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 4118523

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
21286763	GT-AG	0.0815381124955155	157	rna-XM_006676300.1 4118523	1	2547799	2547955	Batrachochytrium dendrobatidis 109871	AAT\|GTATGTTTTT...GGTTTCATAATC/CATAATCTAATT...ATTAG\|GCT	0	1	9.455
21286764	GT-AG	0.0007694910661049	112	rna-XM_006676300.1 4118523	2	2547495	2547606	Batrachochytrium dendrobatidis 109871	GAG\|GTATTTTGAA...TGATCATTGGCT/TACATACTGATC...TTCAG\|ATC	0	1	14.297
21286765	GT-AG	0.0008096945082633	94	rna-XM_006676300.1 4118523	3	2547290	2547383	Batrachochytrium dendrobatidis 109871	GGG\|GTAACTCGCA...AAATTTTTACAA/TATTTGCTAACC...CTTAG\|AAA	0	1	17.095
21286766	GT-AG	4.862229095359541e-05	90	rna-XM_006676300.1 4118523	4	2547158	2547247	Batrachochytrium dendrobatidis 109871	ACC\|GTAAGTACAT...TGTTTTTTAATC/TGTTTTTTAATC...TGCAG\|GTT	0	1	18.154
21286767	GT-AG	0.0005589417481718	369	rna-XM_006676300.1 4118523	5	2546644	2547012	Batrachochytrium dendrobatidis 109871	TTT\|GTAGGTTTTT...CAATTGGTAACT/TGGTAACTAATG...TGTAG\|CTG	1	1	21.81
21286768	GT-AG	0.0010576299628793	82	rna-XM_006676300.1 4118523	6	2546541	2546622	Batrachochytrium dendrobatidis 109871	GGG\|GTAAGCTTTT...TACATTTTGAAT/TACATTTTGAAT...AACAG\|GCG	1	1	22.34
21286769	GT-AG	0.0142211668358724	93	rna-XM_006676300.1 4118523	7	2545831	2545923	Batrachochytrium dendrobatidis 109871	GAG\|GTATGCATTT...TAAAGCTTGACA/CTTGACATCATT...TTCAG\|ACT	0	1	37.897
21286770	GT-AG	0.0010086760521682	87	rna-XM_006676300.1 4118523	8	2545473	2545559	Batrachochytrium dendrobatidis 109871	CTA\|GTATGTAAAT...CCGACTTTATTA/ACTTTATTAATG...TTTAG\|CAT	1	1	44.73

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);