WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 4118504

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
21286637	GT-AG	0.0008267701691109	138	rna-XM_006674948.1 4118504	1	3700766	3700903	Batrachochytrium dendrobatidis 109871	GGT\|GTAGACGCAT...AAACTCTGGACT/CCAATCCAAACT...CCGAG\|TTG	0	1	31.101
21286638	GT-AG	1.000000099473604e-05	174	rna-XM_006674948.1 4118504	2	3701257	3701430	Batrachochytrium dendrobatidis 109871	ACA\|GTTTGAACAT...TCTGTCTGAATT/TCTGAATTTACT...GCTAG\|ATC	2	1	38.465
21286639	GT-AG	0.0697360157325194	72	rna-XM_006674948.1 4118504	3	3702678	3702749	Batrachochytrium dendrobatidis 109871	ATG\|GTATATTATT...TTATTTTTGATT/TTATTTTTGATT...TCTAG\|GTA	1	1	64.476
21286640	GT-AG	3.652502582705001	79	rna-XM_006674948.1 4118504	4	3702994	3703072	Batrachochytrium dendrobatidis 109871	TAG\|GTATCCCACA...TTTGTTTTATTT/TTTTGTTTTATT...AATAG\|AGG	2	1	69.566
21286641	GT-AG	0.0019709141343093	72	rna-XM_006674948.1 4118504	5	3703977	3704048	Batrachochytrium dendrobatidis 109871	GTT\|GTAAGTTTTG...ATTTCATTAACC/TTGCATTTCATT...TGTAG\|TAT	0	1	88.423
21286642	GT-AG	0.0041942189206372	92	rna-XM_006674948.1 4118504	6	3704184	3704275	Batrachochytrium dendrobatidis 109871	GAG\|GTAACTATTT...TGATTTTTGAAA/ATTTATTTGATT...AATAG\|TTT	0	1	91.239
21286643	GT-AG	0.0050803151640084	153	rna-XM_006674948.1 4118504	7	3704348	3704500	Batrachochytrium dendrobatidis 109871	CAA\|GTTTCTGGTG...GGGTATTTGAAA/GGGTATTTGAAA...CACAG\|TTA	0	1	92.741

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);