WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 410641

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
2418918	GT-AG	3.298433000010468e-05	351	rna-XM_015918879.1 410641	1	38890	39240	Acropora digitifera 70779	AAT\|GTTAGTTTTC...TCTCTTTTAGTT/AAAGATTTCATT...TACAG\|ACC	1	1	2.013
2418919	GT-AG	1.000000099473604e-05	453	rna-XM_015918879.1 410641	2	39546	39998	Acropora digitifera 70779	AGG\|GTAATTATCA...CTCTCGTTAAAG/TTTCAATTCAAT...TCTAG\|TTG	0	1	20.071
2418920	GT-AG	0.0042866496421965	3909	rna-XM_015918879.1 410641	3	40146	44054	Acropora digitifera 70779	AGT\|GTTACTTGGG...TGAGTCTTGATA/TGAGTCTTGATA...TGTAG\|GTT	0	1	28.774
2418921	GT-AG	2.113712823016986e-05	328	rna-XM_015918879.1 410641	4	44199	44526	Acropora digitifera 70779	AAG\|GTATTGCAGC...TGGTTTTTACTC/ATGGTTTTTACT...TGCAG\|TAT	0	1	37.3
2418922	GT-AG	1.000000099473604e-05	832	rna-XM_015918879.1 410641	5	44669	45500	Acropora digitifera 70779	CAG\|GTAAGAATTA...TGTCGATTAATT/TGTCGATTAATT...TCTAG\|ACA	1	1	45.708
2418923	GT-AG	0.0002250682095581	423	rna-XM_015918879.1 410641	6	45824	46246	Acropora digitifera 70779	AAG\|GTAACGATGA...TCATCTTTATTT/ACCGTTCTCATC...TTCAG\|TTG	0	1	64.831
2418924	GT-AG	1.5727679290053772e-05	513	rna-XM_015918879.1 410641	7	46395	46907	Acropora digitifera 70779	GAG\|GTAATTTCTT...ATAATATTGATT/ATTATACTAATT...GCCAG\|AGC	1	1	73.594
2418925	GT-AG	1.000000099473604e-05	545	rna-XM_015918879.1 410641	8	47219	47763	Acropora digitifera 70779	AAG\|GTAAATCTAT...TCAACTGTAATA/ACTGTAATAACA...TTTAG\|ATT	0	1	92.007

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);