introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 4072574

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
21102080 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCFE|K493DRAFT_mRNA272759 4072574 1 130187 130237 Basidiobolus meristosporus 423460 AAG|GTAAGATAGA...CTGGCTCTAACC/ACGTATCTGACC...GGCAG|GTT 0 1 17.932
21102081 GT-AG 0 0.0210462103874598 50 rna-gnl|WGS:MCFE|K493DRAFT_mRNA272759 4072574 2 129915 129964 Basidiobolus meristosporus 423460 CAG|GTACCCAACA...ACCTTGTTAATC/ACCTTGTTAATC...CACAG|GGG 0 1 27.618
21102082 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCFE|K493DRAFT_mRNA272759 4072574 3 129688 129740 Basidiobolus meristosporus 423460 ATG|GTAACAGCCT...GTTGCTAAAACC/AGGTTGCTAAAA...AACAG|GAA 0 1 35.209
21102083 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCFE|K493DRAFT_mRNA272759 4072574 4 129542 129600 Basidiobolus meristosporus 423460 ATG|GTCAGTATAA...TTTCCCTAAGCC/CTTTCCCTAAGC...TCTAG|AGA 0 1 39.005
21102084 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCFE|K493DRAFT_mRNA272759 4072574 5 129382 129448 Basidiobolus meristosporus 423460 TCG|GTAAGTCGGG...CCATCATTAAAC/CCATCATTAAAC...CCTAG|CAA 0 1 43.063
21102085 GT-AG 0 3.305900575948293e-05 59 rna-gnl|WGS:MCFE|K493DRAFT_mRNA272759 4072574 6 128920 128978 Basidiobolus meristosporus 423460 ATG|GTATGTCAAG...CACTCAATAACG/CATGCACTCAAT...AGCAG|GTA 1 1 60.646

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);