WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 38725029

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
214074050	GT-AG	1.000000099473604e-05	23860	rna-XM_005479636.3 38725029	2	42375904	42399763	Zonotrichia albicollis 44394	TTG\|GTAAGTAATT...TCATTTTTGTCT/CTTTCCATCATT...TTTAG\|GTC	1	1	26.685
214074051	GT-AG	1.000000099473604e-05	2392	rna-XM_005479636.3 38725029	3	42373323	42375714	Zonotrichia albicollis 44394	TAG\|GTAAATAACA...TTGCCCTTTTTA/CCCTTTTTAAGT...CCCAG\|GTC	1	1	33.287
214074052	GT-AG	3.179079264631243e-05	111	rna-XM_005479636.3 38725029	4	42373032	42373142	Zonotrichia albicollis 44394	CTG\|GTATGGAGTT...TATGCCTGAGCT/CCTGAGCTCACT...CACAG\|GTC	1	1	39.574
214074053	GT-AG	1.000000099473604e-05	99	rna-XM_005479636.3 38725029	5	42371857	42371955	Zonotrichia albicollis 44394	AAG\|GTAGGAGAGC...ATGTGCTCAGTA/GATGTGCTCAGT...TGCAG\|GCC	0	1	77.157
214074054	GT-AG	1.000000099473604e-05	993	rna-XM_005479636.3 38725029	6	42370764	42371756	Zonotrichia albicollis 44394	CAG\|GTAAGAGACT...TATTCTTTATCT/TTATTCTTTATC...TGCAG\|CCT	1	1	80.65
214074055	GT-AG	8.235858867662799e-05	853	rna-XM_005479636.3 38725029	7	42369699	42370551	Zonotrichia albicollis 44394	CAG\|GTATGTGGAA...CCTTTCTTATCT/ATTGCTTTCATC...TGCAG\|TAC	0	1	88.054
214075716	GT-AG	1.000000099473604e-05	47620	rna-XM_005479636.3 38725029	1	42400383	42448002	Zonotrichia albicollis 44394	AAC\|GTGAGTGCTC...AAATTTTTAAAT/AAATTTTTAAAT...TGCAG\|ATT		0	18.163

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);