WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 38724982

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
214073250	GT-AG	0.0002318523205976	56861	rna-XM_005479438.3 38724982	1	20866692	20923552	Zonotrichia albicollis 44394	AAC\|GTAAGTTTCC...GTGTCCCTGATT/GTGTCCCTGATT...TTAAG\|GGC	1	1	1.157
214073251	GT-AG	0.0002795181529727	15506	rna-XM_005479438.3 38724982	2	20851027	20866532	Zonotrichia albicollis 44394	AAG\|GTAATCATTG...TATTTTTTGATG/TATTTTTTGATG...TTCAG\|GCA	1	1	5.758
214073252	GT-AG	1.000000099473604e-05	74993	rna-XM_005479438.3 38724982	3	20775932	20850924	Zonotrichia albicollis 44394	CAG\|GTAGGGAGAA...GTTTTCTTTGTT/AGTACTCTCAAC...TGCAG\|GAG	1	1	8.709
214073253	GT-AG	0.0015233238854402	48924	rna-XM_005479438.3 38724982	4	20726889	20775812	Zonotrichia albicollis 44394	TTG\|GTATGTAGAT...AAGTTCTTAATC/TTTGTTATCATC...TACAG\|AAG	0	1	12.153
214073254	GT-AG	1.000000099473604e-05	99470	rna-XM_005479438.3 38724982	5	20627307	20726776	Zonotrichia albicollis 44394	AAG\|GTAAACACAA...TGTTTTTTGCTT/TGGAATTTGATA...TGCAG\|GAG	1	1	15.394
214073255	GT-AG	1.000000099473604e-05	4295	rna-XM_005479438.3 38724982	6	20622805	20627099	Zonotrichia albicollis 44394	ACA\|GTAAGTGAGG...TGAACTGTGACT/CTGTGACTAACC...TGTAG\|AGG	1	1	21.383
214073256	GT-AG	1.000000099473604e-05	4660	rna-XM_005479438.3 38724982	7	20617920	20622579	Zonotrichia albicollis 44394	GTG\|GTAAGTATCA...TTTTGCTTGTCT/GGTCACTTCATT...TGTAG\|GAG	1	1	27.894

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);