WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 38690358

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213933630	GT-AG	6.39775903338464e-05	253	rna-XM_016046035.2 38690358	1	36540323	36540575	Ziziphus jujuba 326968	AAG\|GTACGTATAG...TATATTTTAAAT/TATATTTTAAAT...TTCAG\|ACA	0	1	7.114
213933631	GT-AG	1.000000099473604e-05	177	rna-XM_016046035.2 38690358	2	36540091	36540267	Ziziphus jujuba 326968	TAG\|GTAAGTGGGA...TCGGTCTTATTG/TTCGGTCTTATT...GGCAG\|AGA	1	1	8.58
213933632	GT-AG	1.000000099473604e-05	95	rna-XM_016046035.2 38690358	3	36539820	36539914	Ziziphus jujuba 326968	AAG\|GTTTAAATAT...ATTTTCTTGTAT/TTCCAATTAACC...TGCAG\|ATG	0	1	13.269
213933633	GT-AG	1.000000099473604e-05	400	rna-XM_016046035.2 38690358	4	36539255	36539654	Ziziphus jujuba 326968	GAG\|GTAAAGTTGG...ATTTTGTTGATT/ATTTTGTTGATT...TAAAG\|CTT	0	1	17.666
213933634	GT-AG	1.000000099473604e-05	110	rna-XM_016046035.2 38690358	5	36538849	36538958	Ziziphus jujuba 326968	GAG\|GTAATGTTAA...TCTCCCTTGTTG/GAGAGACTAATT...TACAG\|AGG	2	1	25.553
213933635	GT-AG	2.1345765270963965e-05	129	rna-XM_016046035.2 38690358	6	36538403	36538531	Ziziphus jujuba 326968	AAG\|GTAAGCTCAT...TTTCTCTGGATT/TTGCTCCTGATT...GGCAG\|GTA	1	1	33.999
213933636	GT-AG	0.0004641040470151	126	rna-XM_016046035.2 38690358	7	36538053	36538178	Ziziphus jujuba 326968	CAG\|GTCTCAACAA...TATTTCTTATTA/ATATTTCTTATT...GGCAG\|GTT	0	1	39.968
213933637	GT-AG	1.000000099473604e-05	285	rna-XM_016046035.2 38690358	8	36535863	36536147	Ziziphus jujuba 326968	CAG\|GTACAAAATC...CCAGATTTGACT/ATTTGACTAATC...ATTAG\|GTT	0	1	90.727

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);