WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 38690338

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213933340	GT-AG	0.0027036979558082	98	rna-XM_016016466.2 38690338	2	41896025	41896122	Ziziphus jujuba 326968	GCG\|GTACGCTGTT...TTTGTCTCAAAT/TTTTGTCTCAAA...TTCAG\|TGG	0	1	6.695
213933341	GT-AG	1.000000099473604e-05	384	rna-XM_016016466.2 38690338	3	41896217	41896600	Ziziphus jujuba 326968	AAG\|GTAATTTTTT...GTTGTGTGAATA/TGAATAGTGATT...TGCAG\|AAT	1	1	8.779
213933342	GT-AG	1.000000099473604e-05	803	rna-XM_016016466.2 38690338	4	41897947	41898749	Ziziphus jujuba 326968	AAG\|GTTGGTTTCC...AATTCTGTAATG/TTGATACTCATC...TGCAG\|CCT	0	1	38.617
213933343	GT-AG	1.000000099473604e-05	284	rna-XM_016016466.2 38690338	5	41900156	41900439	Ziziphus jujuba 326968	AAA\|GTAAGTGAAT...GTTTGGTTGACT/GTTTGGTTGACT...TTCAG\|GGA	2	1	69.785
213933344	GT-AG	0.0001228754272586	113	rna-XM_016016466.2 38690338	6	41900571	41900683	Ziziphus jujuba 326968	CAG\|GTCTGTTCAT...TGGTTTTTAACC/ATTCTTTTCATT...TACAG\|TGA	1	1	72.689
213933345	GT-AG	6.777973400288942e-05	323	rna-XM_016016466.2 38690338	7	41901496	41901818	Ziziphus jujuba 326968	ATG\|GTATGTGCAA...GGTCACTTAATT/TAATTTCTGACT...TGCAG\|GGC	0	1	90.689
213933346	GT-AG	0.0006682309833553	288	rna-XM_016016466.2 38690338	8	41901932	41902219	Ziziphus jujuba 326968	AAG\|GTATATCCAT...TGTGTTTTAATT/TGTGTTTTAATT...TTCAG\|GCT	2	1	93.194
213945265	GT-AG	0.0001612151382587	127	rna-XM_016016466.2 38690338	1	41895839	41895965	Ziziphus jujuba 326968	TTA\|GTAAATCTCT...AATCTCTTGCTT/GAGAAACTGATT...TGAAG\|TCG		0	5.564

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);