WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 38690304

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213932762	GT-AG	0.0001446693804997	619	rna-XM_016045363.2 38690304	1	35977417	35978035	Ziziphus jujuba 326968	ATG\|GTAAATTTCT...TGATCTTTGGTT/GCAATATTGATT...TTCAG\|AGT	1	1	3.124
213932763	GT-AG	1.000000099473604e-05	151	rna-XM_016045363.2 38690304	2	35974297	35974447	Ziziphus jujuba 326968	GAG\|GTACTTGGTT...GTACCTTTTATG/GTGCTGTTTATT...TGCAG\|GGC	0	1	53.531
213932764	GT-AG	1.000000099473604e-05	450	rna-XM_016045363.2 38690304	3	35972544	35972993	Ziziphus jujuba 326968	CAG\|GTTATTTCTT...AATGACTTGATT/TAATGTTTCAAT...TACAG\|GGA	1	1	75.654
213932765	GT-AG	1.000000099473604e-05	82	rna-XM_016045363.2 38690304	4	35972112	35972193	Ziziphus jujuba 326968	ACT\|GTAAGATGAT...TATACATTAAAA/TATACATTAAAA...TATAG\|GAT	0	1	81.596
213932766	GT-AG	1.4776788877792374e-05	255	rna-XM_016045363.2 38690304	5	35971653	35971907	Ziziphus jujuba 326968	GAG\|GTATGAACTT...TGTTCTTTTGCT/ATCTTGCTGACT...TTTAG\|ATG	0	1	85.059
213932767	GT-AG	0.0270180544863735	170	rna-XM_016045363.2 38690304	6	35971331	35971500	Ziziphus jujuba 326968	AAG\|GTATACACCG...TGTGCCTTACCA/GTGTGCCTTACC...TGCAG\|TAA	2	1	87.64
213932768	GT-AG	1.000000099473604e-05	99	rna-XM_016045363.2 38690304	7	35971140	35971238	Ziziphus jujuba 326968	AAG\|GTAATGCTCA...GGCTTCCTACTC/GTGTATTGCACT...TGTAG\|TTT	1	1	89.202
213945255	GT-AG	0.0024789791474001	210	rna-XM_016045363.2 38690304	8	35970812	35971021	Ziziphus jujuba 326968	AAG\|GTATGTCTTC...TTTTTCTTGGTT/GGTTCTTTTACA...GGCAG\|ATT		0	91.205

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);