WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 38690303

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213932752	GT-AG	7.114148876246557e-05	549	rna-XM_016026957.2 38690303	1	10644316	10644864	Ziziphus jujuba 326968	CAG\|GTAAGCTTTC...ATGTTGTTAAAT/ATGTTGTTAAAT...TGTAG\|GAG	2	1	10.615
213932753	GT-AG	0.0002834115238767	97	rna-XM_016026957.2 38690303	2	10645663	10645759	Ziziphus jujuba 326968	TAG\|GTATAATATC...CATGCCATAATA/ATAATATTAATT...TGCAG\|CAC	2	1	25.66
213932754	GT-AG	1.000000099473604e-05	86	rna-XM_016026957.2 38690303	3	10645914	10645999	Ziziphus jujuba 326968	CAG\|GTTCTTTCTT...AAGCCTGTATTT/TTAAGAATTATT...GACAG\|GAA	0	1	28.563
213932755	GT-AG	1.000000099473604e-05	156	rna-XM_016026957.2 38690303	4	10646345	10646500	Ziziphus jujuba 326968	ACG\|GTAATGCTTT...TAGACCTTCATG/CTGTTACTAATC...TGTAG\|GTT	0	1	35.068
213932756	GT-AG	1.000000099473604e-05	85	rna-XM_016026957.2 38690303	5	10647260	10647344	Ziziphus jujuba 326968	CAG\|GTAATTAATT...GGATTTTTCATT/GGATTTTTCATT...GGCAG\|GCA	0	1	49.378
213932757	GT-AG	1.000000099473604e-05	90	rna-XM_016026957.2 38690303	6	10647677	10647766	Ziziphus jujuba 326968	TGG\|GTAGGTGCTA...TGAATTTTAATT/TGAATTTTAATT...TCCAG\|GTT	2	1	55.637
213932758	GT-AG	0.0003883468966113	164	rna-XM_016026957.2 38690303	7	10647894	10648057	Ziziphus jujuba 326968	GAG\|GTGTTTTTAA...TTTATCTTACTT/TTTTATCTTACT...TACAG\|ATT	0	1	58.032
213932759	GT-AG	1.000000099473604e-05	161	rna-XM_016026957.2 38690303	8	10648223	10648383	Ziziphus jujuba 326968	ATT\|GTAAGTACTG...CTTCCTCTAATC/CTTCCTCTAATC...TATAG\|GGT	0	1	61.143
213932760	GT-AG	1.000000099473604e-05	107	rna-XM_016026957.2 38690303	9	10649923	10650029	Ziziphus jujuba 326968	CAG\|GTTAGGCCTA...TTTTCTTTATTA/TTTTTACTGATT...GGCAG\|GTT	0	1	90.158
213932761	GT-AG	0.0010732998385921	176	rna-XM_016026957.2 38690303	10	10650297	10650472	Ziziphus jujuba 326968	GCG\|GTAAGCTTGC...TAATTTTTATTG/TTTTTATTGATT...TCCAG\|TCT	0	1	95.192

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);