WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 38490452

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213116522	GT-AG	1.000000099473604e-05	1219	rna-XM_008667350.2 38490452	1	293327476	293328694	Zea mays 4577	AAG\|GTACGTGCCC...AACCTCTTGCCG/AGGAAGCTAACC...TACAG\|GTG	1	1	3.412
213116523	GT-AG	0.0448210101550101	228	rna-XM_008667350.2 38490452	2	293325595	293325822	Zea mays 4577	CAG\|GTATACAATT...ATGCCCTTAACA/TATTCTTTTACT...CACAG\|GGG	1	1	43.986
213116524	GT-AG	1.7082199053399564e-05	97	rna-XM_008667350.2 38490452	3	293325235	293325331	Zea mays 4577	GTG\|GTAATATTTT...GTCATGTTGATT/GTCATGTTGATT...CTCAG\|ATT	0	1	50.442
213116525	GT-AG	2.438298653544571e-05	105	rna-XM_008667350.2 38490452	4	293324920	293325024	Zea mays 4577	GAG\|GTACATACTT...GAATTTTTGTTT/AAACAACTCATG...TGCAG\|GTA	0	1	55.596
213116526	GT-AG	1.3749817998484203e-05	137	rna-XM_008667350.2 38490452	5	293324564	293324700	Zea mays 4577	CAT\|GTAAGTCTTA...AATGTGTTATTA/TGTGTTATTATA...GTCAG\|GTT	0	1	60.972
213116527	GT-AG	1.000000099473604e-05	209	rna-XM_008667350.2 38490452	6	293323389	293323597	Zea mays 4577	CAG\|GTGAGGATAA...AGTATTTCAATT/CTGTTGCTCATT...TGCAG\|GCA	0	1	84.683
213116528	GT-AG	0.1347831856546914	109	rna-XM_008667350.2 38490452	7	293323184	293323292	Zea mays 4577	GAG\|GTACCCCTTA...GCAGCTTCAATC/CCAATGCTGACA...TACAG\|GTG	0	1	87.04
213116529	GT-AG	1.000000099473604e-05	88	rna-XM_008667350.2 38490452	8	293322997	293323084	Zea mays 4577	CAG\|GTCAACCTGA...TTATTCTTCATT/TTATTCTTCATT...CACAG\|GTG	0	1	89.47
213116530	GT-AG	1.000000099473604e-05	122	rna-XM_008667350.2 38490452	9	293322685	293322806	Zea mays 4577	AAG\|GTGAGCCTTT...GCAGCCCTGACA/GCAGCCCTGACA...TGCAG\|CAT	1	1	94.134

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);