WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 38490451

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213116513	GT-AG	4.866246163726371e-05	2200	rna-NM_001111838.1 38490451	1	293269894	293272093	Zea mays 4577	AAG\|GTACCAGATC...AGACTTTTACAT/TACATTTTCACA...GGCAG\|GTG	1	1	3.851
213116514	GT-AG	0.001777356416833	244	rna-NM_001111838.1 38490451	2	293268012	293268255	Zea mays 4577	CAG\|GTATATACTC...CCTCCCTTAAAA/ACCATATTCATT...TACAG\|GGG	1	1	44.027
213116515	GT-AG	1.844144093346509e-05	101	rna-NM_001111838.1 38490451	3	293267651	293267751	Zea mays 4577	GTG\|GTAATGTTTC...GCTTTTTCAATT/TGCTTTTTCAAT...CTCAG\|ATT	0	1	50.405
213116516	GT-AG	1.000000099473604e-05	96	rna-NM_001111838.1 38490451	4	293267345	293267440	Zea mays 4577	GAG\|GTATAGGACA...ATTTCCAGAAAA/CAAACACTCACG...CACAG\|GTA	0	1	55.556
213116517	GT-AG	1.000000099473604e-05	151	rna-NM_001111838.1 38490451	5	293266975	293267125	Zea mays 4577	CAT\|GTAAGTCCTG...ATGGTGTTAGAA/TTAGAAATGATC...GTCAG\|ACT	0	1	60.927
213116518	GT-AG	1.000000099473604e-05	214	rna-NM_001111838.1 38490451	6	293265795	293266008	Zea mays 4577	CAG\|GTGAGGATAA...TTATTCATGACA/TTGTTCCTCATT...TACAG\|GCA	0	1	84.621
213116519	GT-AG	47.46453547933964	133	rna-NM_001111838.1 38490451	7	293265566	293265698	Zea mays 4577	GAG\|GTATCCTTGA...AGTTCTTTAAAC/TGACATTTCATT...CGCAG\|GTG	0	1	86.976
213116520	GT-AG	1.000000099473604e-05	90	rna-NM_001111838.1 38490451	8	293265377	293265466	Zea mays 4577	CAG\|GTCAGCTATA...CTCCTCTAAAAA/CTGTTCATCATT...TCCAG\|ATC	0	1	89.404
213116521	GC-AG	1.000000099473604e-05	128	rna-NM_001111838.1 38490451	9	293265059	293265186	Zea mays 4577	AAG\|GCAAGTATCT...AAAATCCTGACA/AAAATCCTGACA...TGCAG\|CGT	1	1	94.064

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);