WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 38490449

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213116491	GT-AG	1.000000099473604e-05	335	rna-NM_001360101.1 38490449	2	282631838	282632172	Zea mays 4577	ACT\|GTGAGTTGCT...GGTTTTTCATCT/GGGTTTTTCATC...TGTAG\|GGG	0	1	6.8
213116492	GT-AG	1.000000099473604e-05	278	rna-NM_001360101.1 38490449	3	282635251	282635528	Zea mays 4577	GAG\|GTAATGTATT...CATTCTCTAATC/CATTCTCTAATC...CACAG\|GTA	0	1	76.802
213116493	GT-AG	0.0061140294145507	148	rna-NM_001360101.1 38490449	4	282635662	282635809	Zea mays 4577	AGT\|GTATGTGATC...ATTATTTTGATG/ATTATTTTGATG...TGCAG\|ATC	1	1	79.827
213116494	GT-AG	1.000000099473604e-05	933	rna-NM_001360101.1 38490449	5	282635899	282636831	Zea mays 4577	CTG\|GTAATACTTC...ATAATCTAAAAT/GAAGTTCTAATG...TGCAG\|CTG	0	1	81.851
213116495	GT-AG	0.0002903199916302	1520	rna-NM_001360101.1 38490449	6	282637071	282638590	Zea mays 4577	TGG\|GTACGCACCT...TTTGTCTTTCCT/AGATGTCTAATT...TGCAG\|ATC	2	1	87.287
213116496	GT-AG	1.4122389831351793e-05	859	rna-NM_001360101.1 38490449	7	282638678	282639536	Zea mays 4577	CCG\|GTGCGTTGTT...CATATCTTATCC/GTTGTTTTCATA...AACAG\|AAT	2	1	89.265
213116497	GT-AG	0.0085772292504848	426	rna-NM_001360101.1 38490449	8	282639637	282640062	Zea mays 4577	ATG\|GTATGCATGC...TGCCCCTTGTTT/ACTTTTCTGATG...TTCAG\|ATC	0	1	91.54
213116498	GT-AG	1.000000099473604e-05	104	rna-NM_001360101.1 38490449	9	282640274	282640377	Zea mays 4577	GAG\|GTTAGAACAG...CCTTTCATATAA/CAGAGATTTATA...TGTAG\|ACA	1	1	96.338
213116499	GT-AG	1.000000099473604e-05	227	rna-NM_001360101.1 38490449	10	282640538	282640764	Zea mays 4577	TTG\|GTAAGTACAA...CCTTTTTTAATC/CCTTTTTTAATC...TGCAG\|A	2	1	99.977

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);