WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 38490425

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213116237	GT-AG	1.000000099473604e-05	410	rna-XM_008660420.2 38490425	1	101801575	101801984	Zea mays 4577	GAG\|GTGCGTTGTG...TGGTGATTGATG/TGGTGATTGATG...TGTAG\|GAA	0	1	1.639
213116238	GT-AG	1.000000099473604e-05	1023	rna-XM_008660420.2 38490425	2	101802057	101803079	Zea mays 4577	GAG\|GTGAGCATTG...ATTGTTTTATAT/TATTGTTTTATA...TCTAG\|GAC	0	1	3.213
213116239	GT-AG	4.25143146689216e-05	2093	rna-XM_008660420.2 38490425	3	101804169	101806261	Zea mays 4577	GAT\|GTAAGTAACT...TTGTTTTTAACA/TTGTTTTTAACA...CTCAG\|GTT	0	1	27.016
213116240	GT-AG	0.0001079541080306	2403	rna-XM_008660420.2 38490425	4	101806348	101808750	Zea mays 4577	TAC\|GTAAGTTACA...TTAGTGTTAACT/TGTTAATTTATT...ACTAG\|TTA	2	1	28.896
213116241	GT-AG	1.000000099473604e-05	105	rna-XM_008660420.2 38490425	5	101809539	101809643	Zea mays 4577	GAG\|GTTTGGCTAA...TTAGTTTTAGTC/CGTATGCTAACC...CACAG\|GCC	1	1	46.12
213116242	GT-AG	0.0001222765256831	103	rna-XM_008660420.2 38490425	6	101810061	101810163	Zea mays 4577	CTG\|GTAAGCTCTT...GCTTTCTTTATG/GCTTTCTTTATG...ATCAG\|GAT	1	1	55.235
213116243	GT-AG	0.0004963939086888	224	rna-XM_008660420.2 38490425	7	101810741	101810964	Zea mays 4577	GCA\|GTATGACCCT...AGGGTTTTAATG/CATATTCTAACT...TTCAG\|GGG	2	1	67.847
213116244	GT-AG	0.01156225084046	78	rna-XM_008660420.2 38490425	8	101811196	101811273	Zea mays 4577	AAG\|GTATCACTGT...TGAGTTTCAATC/ATGAGTTTCAAT...AACAG\|TTA	2	1	72.896
213116245	GT-AG	0.0002860342247352	85	rna-XM_008660420.2 38490425	9	101811399	101811483	Zea mays 4577	AAC\|GTAAGTTTAT...TTCTTTTTGATA/TTCTTTTTGATA...TACAG\|GTT	1	1	75.628
213116246	GT-AG	1.000000099473604e-05	88	rna-XM_008660420.2 38490425	10	101811919	101812006	Zea mays 4577	AAG\|GTGGTGGCAT...TAATCCTTATAT/TCTTGTTTAATC...TTCAG\|ATA	1	1	85.137

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);