WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 38490415

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
213116132	GT-AG	1.000000099473604e-05	674	rna-NM_001363234.1 38490415	1	153863686	153864359	Zea mays 4577	GAG\|GTGAGCTCTC...TACTCATTAAAT/ATCATACTCATT...AACAG\|ACT	0	1	3.21
213116133	GT-AG	1.000000099473604e-05	116	rna-NM_001363234.1 38490415	2	153864451	153864566	Zea mays 4577	AAG\|GTGATTAGCG...TACCTCTTATTC/TCTTTACTGATC...AATAG\|GCA	1	1	5.014
213116134	GT-AG	1.000000099473604e-05	436	rna-NM_001363234.1 38490415	3	153865691	153866126	Zea mays 4577	GAG\|GTTAGTTCTG...CTCTTTTTTTCC/GGTCAATTGATC...CGCAG\|AAT	0	1	27.289
213116135	GT-AG	1.000000099473604e-05	700	rna-NM_001363234.1 38490415	4	153866998	153867697	Zea mays 4577	AAG\|GTTATACCAC...AATACTTTATTT/CAATACTTTATT...TGCAG\|GTA	1	1	44.55
213116136	GT-AG	0.0002119111482014	125	rna-NM_001363234.1 38490415	5	153868199	153868323	Zea mays 4577	CAG\|GTTTGCTATA...TTCCATTTAATT/ATTTAATTTATT...TGCAG\|GCC	1	1	54.479
213116137	GT-AG	1.000000099473604e-05	379	rna-NM_001363234.1 38490415	6	153868605	153868983	Zea mays 4577	AAG\|GTGGGTAGAG...TGCATTTTGATT/TGCATTTTGATT...TGTAG\|AAT	0	1	60.048
213116138	GT-AG	2.2484545518371493e-05	129	rna-NM_001363234.1 38490415	7	153869080	153869208	Zea mays 4577	AAG\|GTCAACTTCT...ATTACCGTAACT/GTAACTCTAAAT...TGCAG\|GCT	0	1	61.95
213116139	GT-AG	0.0005186263186466	371	rna-NM_001363234.1 38490415	8	153869335	153869705	Zea mays 4577	GCG\|GTAAACTATT...CAAACCTTATAC/TATTGTATAATT...TCTAG\|GTG	0	1	64.447

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);