WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 38421835

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
212703186	GT-AG	0.0005266204290081	6792	rna-gnl\|WGS:VZUH\|XIPELE_R04451_mrna 38421835	1	781644	788435	Xiphorhynchus elegans 269412	TTG\|GTATGAATTT...CACATTTTAATG/CACATTTTAATG...TTCAG\|ATC	1	1	31.789
212703187	GT-AG	1.000000099473604e-05	11435	rna-gnl\|WGS:VZUH\|XIPELE_R04451_mrna 38421835	2	770107	781541	Xiphorhynchus elegans 269412	AAG\|GTGATGTAAC...GTTCTCTTATTC/TGTTCTCTTATT...ATTAG\|GTG	1	1	44.916
212703188	GT-AG	1.000000099473604e-05	4962	rna-gnl\|WGS:VZUH\|XIPELE_R04451_mrna 38421835	3	765053	770014	Xiphorhynchus elegans 269412	CAG\|GTGAGTGGAT...AGGTTTTTACTC/AAGGTTTTTACT...CTAAG\|GTT	0	1	56.757
212703189	GT-AG	1.000000099473604e-05	509	rna-gnl\|WGS:VZUH\|XIPELE_R04451_mrna 38421835	4	764361	764869	Xiphorhynchus elegans 269412	CAG\|GTAATGAAGG...TAAATTTTAATG/ATTTTCTTCAAA...TTCAG\|AAT	0	1	80.309
212703190	GT-AG	1.000000099473604e-05	2160	rna-gnl\|WGS:VZUH\|XIPELE_R04451_mrna 38421835	5	762141	764300	Xiphorhynchus elegans 269412	AAG\|GTAAGGTTTG...ATGATGTTAACT/ATGATGTTAACT...TATAG\|GTG	0	1	88.031

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);