WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 38189448

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
210820226	GT-AG	0.0026672599996853	3112	rna-XM_025991278.1 38189448	6	33511140	33514251	Vulpes vulpes 9627	AAG\|GTATGGTTTG...TAGTTTTTAATA/TAGTTTTTAATA...TACAG\|ACG	1	1	13.433
210820227	GT-AG	1.000000099473604e-05	24168	rna-XM_025991278.1 38189448	7	33514346	33538513	Vulpes vulpes 9627	CGG\|GTAAGGGAAA...TTCTCTTTGTCT/ACCATACTAATT...TCTAG\|TGA	2	1	15.273
210824400	GT-AG	1.000000099473604e-05	951	rna-XM_025991278.1 38189448	1	33405215	33406165	Vulpes vulpes 9627	TAG\|GTGAGACCCT...TGTGTTTTGTCT/GCGCCTCTCACA...CCAAG\|GTC		0	1.86
210824401	GT-AG	1.000000099473604e-05	70878	rna-XM_025991278.1 38189448	2	33406240	33477117	Vulpes vulpes 9627	AAA\|GTAAGTGGCC...TTTTTTTTCATC/TTTTTTTTCATC...TTCAG\|GGT		0	3.309
210824402	GT-AG	0.0078938380157914	339	rna-XM_025991278.1 38189448	3	33477184	33477522	Vulpes vulpes 9627	AAG\|GTATACAGTT...CCTTTCATGACT/TGACTGTTAATT...TGCAG\|ACT		0	4.602
210824403	GT-AG	6.424359167391969e-05	27607	rna-XM_025991278.1 38189448	4	33477603	33505209	Vulpes vulpes 9627	AAG\|GTAACCAAAA...AATATTTCACCA/AAATATTTCACC...TACAG\|GGA		0	6.168
210824404	GT-AG	1.000000099473604e-05	5509	rna-XM_025991278.1 38189448	5	33505343	33510851	Vulpes vulpes 9627	AAG\|GTTGGTTCTA...TTTTTGTTAGTA/TTTTTTGTTAGT...TACAG\|ACA		0	8.772

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);