WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 38015505

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209850108	GT-AG	0.0001784930834184	87	rna-XM_028085248.1 38015505	2	10233978	10234064	Vigna unguiculata 3917	GAG\|GTATGATATT...CTCTTTTTAGTG/TTTTTAGTGACA...TTTAG\|GAT	0	1	77.205
209850109	GT-AG	0.0004583179981961	519	rna-XM_028085248.1 38015505	3	10233396	10233914	Vigna unguiculata 3917	CAG\|GTATTATTCT...TTCAGTTTAATA/GATTTACTAACA...GGCAG\|TTC	0	1	78.744
209850110	GT-AG	3.2992360248539873e-05	1315	rna-XM_028085248.1 38015505	4	10231928	10233242	Vigna unguiculata 3917	CTG\|GTAATTTGCT...ACTCTCTTATAT/TTCATTCTCACT...CACAG\|ACC	0	1	82.482
209850111	GT-AG	1.000000099473604e-05	317	rna-XM_028085248.1 38015505	5	10231447	10231763	Vigna unguiculata 3917	TAG\|GTAATGTATC...ATGGTCTTATTG/CATGGTCTTATT...TCCAG\|ATA	2	1	86.489
209850112	GT-AG	0.0078082083643746	83	rna-XM_028085248.1 38015505	6	10231216	10231298	Vigna unguiculata 3917	AAG\|GTATATATTA...TTTTTCTTCACT/TTTTTCTTCACT...ACAAG\|GTT	0	1	90.105
209850113	GT-AG	0.0031755526861831	301	rna-XM_028085248.1 38015505	7	10230792	10231092	Vigna unguiculata 3917	AAG\|GTAAACTTTC...ATTACCTTACCT/TATTACCTTACC...TTTAG\|GTT	0	1	93.11
209850114	GT-AG	1.000000099473604e-05	1077	rna-XM_028085248.1 38015505	8	10229627	10230703	Vigna unguiculata 3917	TTG\|GTGCGGTCCT...CTTTTCTCAACA/ACTTTTCTCAAC...TGCAG\|GAG	1	1	95.26
209860033	GT-AG	0.0004741534095509	858	rna-XM_028085248.1 38015505	1	10237244	10238101	Vigna unguiculata 3917	CAG\|GTATTTAGTT...TACATCTTACAT/CTAAGTTTCATC...CACAG\|GGT		0	7.354

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);