WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 38015494

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209849937	GT-AG	0.0001815214448467	5198	rna-XM_028058137.1 38015494	1	3533478	3538675	Vigna unguiculata 3917	GAG\|GTTCGCATCT...ATGTCTTTGACT/ATGTCTTTGACT...TGCAG\|CTG	2	1	11.028
209849938	GT-AG	1.000000099473604e-05	96	rna-XM_028058137.1 38015494	2	3530820	3530915	Vigna unguiculata 3917	CAG\|GTAGTACCTT...TCTTTCTAAATA/TTTCTGCTTATT...TGAAG\|GTG	2	1	75.238
209849939	GC-AG	1.000000099473604e-05	100	rna-XM_028058137.1 38015494	3	3530512	3530611	Vigna unguiculata 3917	CAG\|GCATGGTTTA...CAATTGTTGATT/CAATTGTTGATT...CCCAG\|GAT	0	1	80.451
209849940	GT-AG	1.000000099473604e-05	112	rna-XM_028058137.1 38015494	4	3530121	3530232	Vigna unguiculata 3917	CAG\|GTGCATTTCT...GATGCTTTTGCA/AATGATCTAACT...GGCAG\|TTG	0	1	87.444
209849941	GT-AG	5.88726424929737e-05	91	rna-XM_028058137.1 38015494	5	3529970	3530060	Vigna unguiculata 3917	AAG\|GTATGATGTT...ATTACCTTTTCC/CTTTGGTTAATT...TTCAG\|AAG	0	1	88.947
209849942	GT-AG	1.000000099473604e-05	381	rna-XM_028058137.1 38015494	6	3529458	3529838	Vigna unguiculata 3917	AAG\|GTTAATACAT...ATTTCATTATCT/TATCTTCTGACT...TTCAG\|TAT	2	1	92.231
209849943	GT-AG	1.000000099473604e-05	1107	rna-XM_028058137.1 38015494	7	3528236	3529342	Vigna unguiculata 3917	CAG\|GTAAATCTCT...AATTTGTTGATG/TTATTATTTATG...ACTAG\|GAA	0	1	95.113
209849944	GT-AG	1.0128821497174262e-05	1296	rna-XM_028058137.1 38015494	8	3526783	3528078	Vigna unguiculata 3917	AAG\|GTTTGTTCAT...ATGTATTTAAAT/ATGTATTTAAAT...TGCAG\|GTG	1	1	99.048

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);