WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 37986756

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209727005	GT-AG	1.000000099473604e-05	404	rna-XM_047300169.1 37986756	2	3600	4003	Vigna umbellata 87088	GAA\|GTAAGAAAAT...ATCTTTTTAACA/ATCTTTTTAACA...CTCAG\|TTG	0	1	46.555
209727006	GT-AG	1.000000099473604e-05	327	rna-XM_047300169.1 37986756	3	3115	3441	Vigna umbellata 87088	TAG\|GTGATGTAAA...AATTTTTTAATT/AATTTTTTAATT...AACAG\|GAT	2	1	51.459
209727007	GT-AG	1.000000099473604e-05	394	rna-XM_047300169.1 37986756	4	1877	2270	Vigna umbellata 87088	CAG\|GTGTGTATAC...GTTTCATTGACA/TTAGGTTTCATT...TTCAG\|ATG	0	1	77.654
209727008	GC-AG	0.000204507356911	424	rna-XM_047300169.1 37986756	5	1306	1729	Vigna umbellata 87088	GAG\|GCATGCTTTC...TGCTTCATACTG/AATTGTCTGATA...TGCAG\|AAA	0	1	82.216
209727009	GT-AG	1.000000099473604e-05	98	rna-XM_047300169.1 37986756	6	890	987	Vigna umbellata 87088	AAG\|GTTGGTCTCT...TTATCTTTCATC/TTATCTTTCATC...TGCAG\|AAT	0	1	92.086
209727010	GT-AG	0.0001563026491107	499	rna-XM_047300169.1 37986756	7	331	829	Vigna umbellata 87088	GAG\|GTATGGATTT...TAAACTTTGATA/TTGTAATTCATT...TTCAG\|GTG	0	1	93.948
209727011	GT-AG	0.0340980962897874	424	rna-XM_047300169.1 37986756	1	5442	5865	Vigna umbellata 87088	GAG\|GTAACCATCT...GTTCTCTGAACT/TGTGATCTCACT...TGCAG\|TTC		0	3.724

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);